This might be related to the difficulties of migrating an existing project 
to a custom user model. I'm not sure the steps to workaround the problem. 
We have an open ticket to recommend starting off a project with a custom 
user model to avoid this problem [1]. Sorry I can't be of more help.

[1] https://code.djangoproject.com/ticket/24370

On Tuesday, August 25, 2015 at 7:51:08 AM UTC-4, [email protected] wrote:
>
> Hi,
>
> I would like to add one field to User.
>
> I've created new model based on original Django`s user:
>
>  class User(AbstractUser):
>     is_verified = models.BooleanField(default=False)
>
>     class Meta:
>         db_table = 'auth_user'
>
>
> Now I'm trying to make migrations, but Django tries to create `auth_user` 
> table from scratch, and this is not what I'm expecting.
>
> I've tried to migrate schema by adding one field:
>
> [...] 
>      operations = [
>         migrations.AddField('User', 'is_verified', 
> models.BooleanField(default=False)),
>     ]
>
> But during migrations Django dies at:
>
> [...]
>   File "eggs/Django-1.7.8-py2.7.egg/django/db/migrations/migration.py", 
> line 76, in mutate_state
>     operation.state_forwards(self.app_label, new_state)
>   File 
> "eggs/Django-1.7.8-py2.7.egg/django/db/migrations/operations/fields.py", 
> line 26, in state_forwards
>     state.models[app_label, self.model_name.lower()].fields.append((
> self.name, field))
> KeyError: ('myapp', u'user')
>
>
> I need to add just one column using builtin migrations. 
> How to do that?
> This is bug or feature?
>
> BR,
> Marcin
>

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