Hi,
For the life of me, I cannot figure out why, when I run dmtcp_checkpoint, I get
an error about not being able to connect to the coordinator. Here are snippets
from my script - it's all in 1 script - and the output I get from each of these
commands. Help?
dmtcp_coordinator --port 0 --background --exit-on-last --port-file
/panfs/panfs.ccr.buffalo.edu/projects/ccrstaff/rwleach/PROJECT/CRPC/MACS/LNCaP_control-LNCaP_input_peaks.bed.pad150.formeme.memeout-8cores.port
--ckptdir
/panfs/panfs.ccr.buffalo.edu/projects/ccrstaff/rwleach/PROJECT/CRPC/MACS/LNCaP_control-LNCaP_input_peaks.bed.pad150.formeme.memeout-8cores.ckpt1
--tmpdir /panasas/scratch/rwleach/tmp
dmtcp_coordinator starting...
Port: 34511
Checkpoint Interval: disabled (checkpoint manually instead)
Exit on last client: 1
The port number was written to file
(/panfs/panfs.ccr.buffalo.edu/projects/ccrstaff/rwleach/PROJECT/CRPC/MACS/LNCaP_control-LNCaP_input_peaks.bed.pad150.formeme.memeout-8cores.port)
Backgrounding...
dmtcp_checkpoint --no-gzip --join --port 34511 --tmpdir
/panasas/scratch/rwleach/tmp --ckptdir
/panfs/panfs.ccr.buffalo.edu/projects/ccrstaff/rwleach/PROJECT/CRPC/MACS/LNCaP_control-LNCaP_input_peaks.bed.pad150.formeme.memeout-8cores.ckpt1
--quiet /util/meme/4.6.0/bin/meme.bin
LNCaP_control-LNCaP_input_peaks.bed.pad150.formeme -dna -mod zoops -minw 6
-maxw 25 -revcomp -nostatus -p 8 -o
LNCaP_control-LNCaP_input_peaks.bed.pad150.formeme.memepeak150-8cores -maxsize
30000000 1>
/panfs/panfs.ccr.buffalo.edu/projects/ccrstaff/rwleach/PROJECT/CRPC/MACS/LNCaP_control-LNCaP_input_peaks.bed.pad150.formeme.memeout-8cores
2>
/panfs/panfs.ccr.buffalo.edu/projects/ccrstaff/rwleach/PROJECT/CRPC/MACS/LNCaP_control-LNCaP_input_peaks.bed.pad150.formeme.memeout-8cores.err
&
[15030] ERROR at dmtcpcoordinatorapi.cpp:81 in
createNewConnectionToCoordinator; REASON='JASSERT(fd.isValid()) failed'
coordinatorAddr = d06n40b.ccr.buffalo.edu
coordinatorPort = 34511
Message: Failed to connect to DMTCP coordinator
meme.bin (15030): Terminating...
env | grep DMTCP
DMTCP_HOST=d06n40b.ccr.buffalo.edu
DMTCP=/util/dmtcp/1.2.7
DMTCP_CHECKPOINT_DIR=/panfs/panfs.ccr.buffalo.edu/projects/ccrstaff/rwleach/PROJECT/CRPC/MACS/LNCaP_control-LNCaP_input_peaks.bed.pad150.formeme.memeout-8cores.
ckpt1
DMTCP_GZIP=0
DMTCP_TMPDIR=/panasas/scratch/rwleach/tmp
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