Hi.
I have Matlab 2014a and DMTCP 2.2.1 installed.
When I run matlab with dmtcp_checkpoint I get the following error message:
-------------------
[ul_lit71@uc1n997 ~]$ dmtcp_checkpoint matlab -nodisplay -nojvm
*** glibc detected *** awk: realloc(): invalid pointer:
0x00002b37dd0b8c08 ***
======= Backtrace: =========
/lib64/libc.so.6[0x3ed9a76166]
/lib64/libc.so.6(realloc+0x2e2)[0x3ed9a7bfd2]
/pfs/data2/home/ul/ul_kizinfra/ul_lit71/bin/../lib/dmtcp/libdmtcp_alloc.so(realloc+0x35)[0x2b37dc59cc15]
/lib64/libc.so.6(getdelim+0x166)[0x3ed9a67f86]
/pfs/data2/home/ul/ul_kizinfra/ul_lit71/bin/../lib/dmtcp/libdmtcp.so(_ZN5jalib10Filesystem14GetProgramArgsEv+0x22b)[0x2b37dcc7209b]
/pfs/data2/home/ul/ul_kizinfra/ul_lit71/bin/../lib/dmtcp/libdmtcp.so(_ZN5dmtcp11DmtcpWorkerC1Eb+0x12c)[0x2b37dcc37f8c]
/pfs/data2/home/ul/ul_kizinfra/ul_lit71/bin/../lib/dmtcp/libdmtcp.so(+0x18a4b)[0x2b37dcc38a4b]
/pfs/data2/home/ul/ul_kizinfra/ul_lit71/bin/../lib/dmtcp/libdmtcp.so(+0x5eb96)[0x2b37dcc7eb96]
======= Memory map: ========
00400000-00456000 r-xp 00000000 08:02 310570
/bin/gawk
00656000-0065c000 rw-p 00056000 08:02 310570
/bin/gawk
0065c000-00663000 rw-p 00000000 00:00 0
0085b000-0085d000 rw-p 0005b000 08:02 310570
/bin/gawk
024db000-024fc000 rw-p 00000000 00:00 0
[heap]
3ed9600000-3ed9620000 r-xp 00000000 08:02 311079
/lib64/ld-2.12.so
3ed981f000-3ed9820000 r--p 0001f000 08:02 311079
/lib64/ld-2.12.so
3ed9820000-3ed9821000 rw-p 00020000 08:02 311079
/lib64/ld-2.12.so
3ed9821000-3ed9822000 rw-p 00000000 00:00 0
3ed9a00000-3ed9b8b000 r-xp 00000000 08:02 311068
/lib64/libc-2.12.so
3ed9b8b000-3ed9d8a000 ---p 0018b000 08:02 311068
/lib64/libc-2.12.so
3ed9d8a000-3ed9d8e000 r--p 0018a000 08:02 311068
/lib64/libc-2.12.so
3ed9d8e000-3ed9d8f000 rw-p 0018e000 08:02 311068
/lib64/libc-2.12.so
3ed9d8f000-3ed9d94000 rw-p 00000000 00:00 0
3ed9e00000-3ed9e83000 r-xp 00000000 08:02 310677
/lib64/libm-2.12.so
3ed9e83000-3eda082000 ---p 00083000 08:02 310677
/lib64/libm-2.12.so
3eda082000-3eda083000 r--p 00082000 08:02 310677
/lib64/libm-2.12.so
3eda083000-3eda084000 rw-p 00083000 08:02 310677
/lib64/libm-2.12.so
3eda200000-3eda202000 r-xp 00000000 08:02 311066
/lib64/libdl-2.12.so
3eda202000-3eda402000 ---p 00002000 08:02 311066
/lib64/libdl-2.12.so
3eda402000-3eda403000 r--p 00002000 08:02 311066
/lib64/libdl-2.12.so
3eda403000-3eda404000 rw-p 00003000 08:02 311066
/lib64/libdl-2.12.so
3eda600000-3eda617000 r-xp 00000000 08:02 311329
/lib64/libpthread-2.12.so
3eda617000-3eda817000 ---p 00017000 08:02 311329
/lib64/libpthread-2.12.so
3eda817000-3eda818000 r--p 00017000 08:02 311329
/lib64/libpthread-2.12.so
3eda818000-3eda819000 rw-p 00018000 08:02 311329
/lib64/libpthread-2.12.so
3eda819000-3eda81d000 rw-p 00000000 00:00 0
3edae00000-3edae07000 r-xp 00000000 08:02 310799
/lib64/librt-2.12.so
3edae07000-3edb006000 ---p 00007000 08:02 310799
/lib64/librt-2.12.so
3edb006000-3edb007000 r--p 00006000 08:02 310799
/lib64/librt-2.12.so
3edb007000-3edb008000 rw-p 00007000 08:02 310799
/lib64/librt-2.12.so
2b37dc59b000-2b37dc59c000 rw-p 00000000 00:00 0
2b37dc59c000-2b37dc59d000 r-xp 00000000 845:bd1e0 144125798843013222
/pfs/data2/home/ul/ul_kizinfra/ul_lit71/lib/dmtcp/libdmtcp_alloc.so
2b37dc59d000-2b37dc79d000 ---p 00001000 845:bd1e0 144125798843013222
/pfs/data2/home/ul/ul_kizinfra/ul_lit71/lib/dmtcp/libdmtcp_alloc.so
2b37dc79d000-2b37dc79e000 rw-p 00001000 845:bd1e0 144125798843013222
/pfs/data2/home/ul/ul_kizinfra/ul_lit71/lib/dmtcp/libdmtcp_alloc.so
2b37dc79e000-2b37dc79f000 rw-p 00000000 00:00 0
2b37dc79f000-2b37dc7a0000 r-xp 00000000 845:bd1e0 144125798843013223
/pfs/data2/home/ul/ul_kizinfra/ul_lit71/lib/dmtcp/libdmtcp_dl.so
2b37dc7a0000-2b37dc99f000 ---p 00001000 845:bd1e0 144125798843013223
/pfs/data2/home/ul/ul_kizinfra/ul_lit71/lib/dmtcp/libdmtcp_dl.so
2b37dc99f000-2b37dc9a0000 rw-p 00000000 845:bd1e0 144125798843013223
/pfs/data2/home/ul/ul_kizinfra/ul_lit71/lib/dmtcp/libdmtcp_dl.so
2b37dc9a0000-2b37dca1a000 r-xp 00000000 845:bd1e0 144125798843013219
/pfs/data2/home/ul/ul_kizinfra/ul_lit71/lib/dmtcp/libdmtcp_ipc.so
2b37dca1a000-2b37dcc1a000 ---p 0007a000 845:bd1e0 144125798843013219
/pfs/data2/home/ul/ul_kizinfra/ul_lit71/lib/dmtcp/libdmtcp_ipc.so
2b37dcc1a000-2b37dcc1d000 rw-p 0007a000 845:bd1e0 144125798843013219
/pfs/data2/home/ul/ul_kizinfra/ul_lit71/lib/dmtcp/libdmtcp_ipc.so
2b37dcc1d000-2b37dcc20000 rw-p 00000000 00:00 0
2b37dcc20000-2b37dcc97000 r-xp 00000000 845:bd1e0 144125798843013230
/pfs/data2/home/ul/ul_kizinfra/ul_lit71/lib/dmtcp/libdmtcp.so
2b37dcc97000-2b37dce96000 ---p 00077000 845:bd1e0 144125798843013230
/pfs/data2/home/ul/ul_kizinfra/ul_lit71/lib/dmtcp/libdmtcp.so
2b37dce96000-2b37dce99000 rw-p 00076000 845:bd1e0 144125798843013230
/pfs/data2/home/ul/ul_kizinfra/ul_lit71/lib/dmtcp/libdmtcp.so
2b37dce99000-2b37dce9e000 rw-p 00000000 00:00 0
2b37dce9e000-2b37dceb3000 r-xp 00000000 845:bd1e0 144125798843013218
/pfs/data2/home/ul/ul_kizinfra/ul_lit71/lib/dmtcp/libdmtcp_pid.so
2b37dceb3000-2b37dd0b3000 ---p 00015000 845:bd1e0 144125798843013218
/pfs/data2/home/ul/ul_kizinfra/ul_lit71/lib/dmtcp/libdmtcp_pid.so
2b37dd0b3000-2b37dd0b4000 rw-p 00015000 845:bd1e0 144125798843013218
/pfs/data2/home/ul/ul_kizinfra/ul_lit71/lib/dmtcp/libdmtcp_pid.so
2b37dd0b4000-2b37dd0c6000 rw-p 00000000 00:00 0
2b37dd0d3000-2b37dd0d4000 rw-p 00000000 00:00 0
2b37dd0d4000-2b37dd1bd000 r-xp 00000000 877:40b7a 144828361741554268
/pfs/da
Internal error 2: Could not determine the path of the
MATLAB root directory.
original command path =
/opt/bwhpc/common/math/matlab/R2014a/bin/matlab
current command path =
/opt/bwhpc/common/math/matlab/R2014a/bin/matlab
Please contact:
MathWorks Technical Support
for further assistance.
-------------------
Without dmtcp it works without problems.
When I change to the matlab/bin directory the "Internal error 2" message
disappears but the other errors remain.
Thanks
Matthias
--
Matthias Neuer
Universität Ulm
kiz / Abteilung Infrastruktur
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