I also confirm this bug, after a clean boot gnome-do works fine, but
after some time it quits with:

Unhandled Exception: System.Exception: Message body length mismatch: 16064 of 
expected 34835
at NDesk.DBus.Connection.ReadMessage () <0x005a4>
at NDesk.DBus.Connection.Iterate () <0x00019>
at <>c__CompilerGenerated0.<>c__AnonymousMethod1 
(intptr,NDesk.GLib.IOCondition,intptr) <0x00027>
at (wrapper native-to-managed) <>c__CompilerGenerated0.<>c__AnonymousMethod1 
(intptr,NDesk.GLib.IOCondition,intptr) <0x0004b>
at (wrapper managed-to-native) Gtk.Application.gtk_main () <0x00004>
at Gtk.Application.Run () <0x00007>
at Do.Do.Main (string[]) <0x001d3>

Most of the times gnome-do will crash again quite fast if I start it again 
during the same session.
I'm using gnome-do - 0.7.98-0 from  
http://ppa.launchpad.net/do-testers/ppa/ubuntu but experienced the same 
behaviour on 0.6.1 on several machines.

-- 
Tomboy plug-in make gnome-do crash in ubuntu 8.10
https://bugs.launchpad.net/bugs/283573
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