ok, should be fixed now. -- Anders
On Thu, Oct 20, 2011 at 09:01:15PM +0200, Martin Sandve Alnæs wrote: > On 20 October 2011 17:01, Anders Logg <[email protected]> wrote: > > This should be fixed now. > > Still getting errors when running demos. Attaching demo.log. > > Martin > ---------------------------------------------------------------------- > ./../../demo/undocumented/sym-dirichlet-bc/cpp (C++) > > <Table of size 2 x 1> > terminate called after throwing an instance of 'std::runtime_error' > what(): > > *** ------------------------------------------------------------------------- > *** DOLFIN encountered an error. If you are not able to resolve this issue > *** using the information listed below, you can ask for help at > *** > *** https://answers.launchpad.net/dolfin > *** > *** Remember to include the error message listed below and, if possible, > *** include a *minimal* running example to reproduce the error. > *** > *** ------------------------------------------------------------------------- > *** Error: Unable to solve linear system using LU factorization. > *** Reason: Unknown LU method "cholesky". Use list_lu_solver_methods() to > list available LU methods. > *** Where: This error was encountered inside LUSolver.cpp. > *** ------------------------------------------------------------------------- > > [martinal-hjemme:21752] *** Process received signal *** > [martinal-hjemme:21752] Signal: Aborted (6) > [martinal-hjemme:21752] Signal code: (-6) > [martinal-hjemme:21752] [ 0] /lib/x86_64-linux-gnu/libc.so.6(+0x36420) > [0x2b685b3c5420] > [martinal-hjemme:21752] [ 1] /lib/x86_64-linux-gnu/libc.so.6(gsignal+0x35) > [0x2b685b3c53a5] > [martinal-hjemme:21752] [ 2] /lib/x86_64-linux-gnu/libc.so.6(abort+0x17b) > [0x2b685b3c8b0b] > [martinal-hjemme:21752] [ 3] > /usr/lib/x86_64-linux-gnu/libstdc++.so.6(_ZN9__gnu_cxx27__verbose_terminate_handlerEv+0x11d) > [0x2b685af2cd7d] > [martinal-hjemme:21752] [ 4] > /usr/lib/x86_64-linux-gnu/libstdc++.so.6(+0xb9f26) [0x2b685af2af26] > [martinal-hjemme:21752] [ 5] > /usr/lib/x86_64-linux-gnu/libstdc++.so.6(+0xb9f53) [0x2b685af2af53] > [martinal-hjemme:21752] [ 6] > /usr/lib/x86_64-linux-gnu/libstdc++.so.6(+0xba04e) [0x2b685af2b04e] > [martinal-hjemme:21752] [ 7] > /home/martinal/opt/fenics/dorsal-unstable/lib/libdolfin.so.1.0(_ZNK6dolfin6Logger12dolfin_errorESsSsSs+0x81c) > [0x2b685a37cdfc] > [martinal-hjemme:21752] [ 8] > /home/martinal/opt/fenics/dorsal-unstable/lib/libdolfin.so.1.0(_ZN6dolfin12dolfin_errorESsSsSsz+0x138) > [0x2b685a3787c8] > [martinal-hjemme:21752] [ 9] > /home/martinal/opt/fenics/dorsal-unstable/lib/libdolfin.so.1.0(_ZN6dolfin8LUSolver4initESs+0x21e) > [0x2b685a34b2fe] > [martinal-hjemme:21752] [10] > /home/martinal/opt/fenics/dorsal-unstable/lib/libdolfin.so.1.0(_ZN6dolfin8LUSolverC2ESs+0x48) > [0x2b685a34bb88] > [martinal-hjemme:21752] [11] ./demo_sym-dirichlet-bc(main+0x423) [0x4134e3] > [martinal-hjemme:21752] [12] > /lib/x86_64-linux-gnu/libc.so.6(__libc_start_main+0xed) [0x2b685b3b030d] > [martinal-hjemme:21752] [13] ./demo_sym-dirichlet-bc() [0x413b6d] > [martinal-hjemme:21752] *** End of error message *** > Aborted > > > ---------------------------------------------------------------------- > ./../../demo/undocumented/dg-poisson/cpp (C++) > > Solving linear variational problem. > terminate called after throwing an instance of 'std::runtime_error' > what(): > > *** ------------------------------------------------------------------------- > *** DOLFIN encountered an error. If you are not able to resolve this issue > *** using the information listed below, you can ask for help at > *** > *** https://answers.launchpad.net/dolfin > *** > *** Remember to include the error message listed below and, if possible, > *** include a *minimal* running example to reproduce the error. > *** > *** ------------------------------------------------------------------------- > *** Error: Unable to solve linear system using LU factorization. > *** Reason: Unknown LU method "default". Use list_lu_solver_methods() to list > available LU methods. > *** Where: This error was encountered inside LUSolver.cpp. > *** ------------------------------------------------------------------------- > > [martinal-hjemme:03427] *** Process received signal *** > [martinal-hjemme:03427] Signal: Aborted (6) > [martinal-hjemme:03427] Signal code: (-6) > [martinal-hjemme:03427] [ 0] /lib/x86_64-linux-gnu/libc.so.6(+0x36420) > [0x2ba330f87420] > [martinal-hjemme:03427] [ 1] /lib/x86_64-linux-gnu/libc.so.6(gsignal+0x35) > [0x2ba330f873a5] > [martinal-hjemme:03427] [ 2] /lib/x86_64-linux-gnu/libc.so.6(abort+0x17b) > [0x2ba330f8ab0b] > [martinal-hjemme:03427] [ 3] > /usr/lib/x86_64-linux-gnu/libstdc++.so.6(_ZN9__gnu_cxx27__verbose_terminate_handlerEv+0x11d) > [0x2ba330aeed7d] > [martinal-hjemme:03427] [ 4] > /usr/lib/x86_64-linux-gnu/libstdc++.so.6(+0xb9f26) [0x2ba330aecf26] > [martinal-hjemme:03427] [ 5] > /usr/lib/x86_64-linux-gnu/libstdc++.so.6(+0xb9f53) [0x2ba330aecf53] > [martinal-hjemme:03427] [ 6] > /usr/lib/x86_64-linux-gnu/libstdc++.so.6(+0xba04e) [0x2ba330aed04e] > [martinal-hjemme:03427] [ 7] > /home/martinal/opt/fenics/dorsal-unstable/lib/libdolfin.so.1.0(_ZNK6dolfin6Logger12dolfin_errorESsSsSs+0x81c) > [0x2ba32ff3edfc] > [martinal-hjemme:03427] [ 8] > /home/martinal/opt/fenics/dorsal-unstable/lib/libdolfin.so.1.0(_ZN6dolfin12dolfin_errorESsSsSsz+0x138) > [0x2ba32ff3a7c8] > [martinal-hjemme:03427] [ 9] > /home/martinal/opt/fenics/dorsal-unstable/lib/libdolfin.so.1.0(_ZN6dolfin8LUSolver4initESs+0x21e) > [0x2ba32ff0d2fe] > [martinal-hjemme:03427] [10] > /home/martinal/opt/fenics/dorsal-unstable/lib/libdolfin.so.1.0(_ZN6dolfin8LUSolverC2ESs+0x48) > [0x2ba32ff0db88] > [martinal-hjemme:03427] [11] > /home/martinal/opt/fenics/dorsal-unstable/lib/libdolfin.so.1.0(_ZN6dolfin12LinearSolverC1ESsSs+0x1f0) > [0x2ba32fee8140] > [martinal-hjemme:03427] [12] > /home/martinal/opt/fenics/dorsal-unstable/lib/libdolfin.so.1.0(_ZN6dolfin23LinearVariationalSolver5solveEv+0x7f9) > [0x2ba32fdcad79] > [martinal-hjemme:03427] [13] > /home/martinal/opt/fenics/dorsal-unstable/lib/libdolfin.so.1.0(_ZN6dolfin5solveERKNS_8EquationERNS_8FunctionESt6vectorIPKNS_17BoundaryConditionESaIS8_EENS_10ParametersE+0x1b1) > [0x2ba32fdb9541] > [martinal-hjemme:03427] [14] > /home/martinal/opt/fenics/dorsal-unstable/lib/libdolfin.so.1.0(_ZN6dolfin5solveERKNS_8EquationERNS_8FunctionENS_10ParametersE+0x117) > [0x2ba32fdb9ff7] > [martinal-hjemme:03427] [15] ./demo_dg-poisson(main+0x16b) [0x40ffab] > [martinal-hjemme:03427] [16] > /lib/x86_64-linux-gnu/libc.so.6(__libc_start_main+0xed) [0x2ba330f7230d] > [martinal-hjemme:03427] [17] ./demo_dg-poisson() [0x4104cd] > [martinal-hjemme:03427] *** End of error message *** > Aborted > > > ---------------------------------------------------------------------- > mpirun -np 3 ./../../demo/undocumented/sym-dirichlet-bc/cpp (C++) > > Process 0: Number of global vertices: 90601 > Process 0: Number of global cells: 180000 > Process 1: Partitioned mesh, edge cut is 558. > Process 2: Partitioned mesh, edge cut is 558. > Process 0: Partitioned mesh, edge cut is 558. > Process 0: *** Warning: Dirichlet boundary condition method 'topological' is > not robust in parallel with symmetric assembly. > Process 2: <Table of size 2 x 1> > Process 1: <Table of size 2 x 1> > Process 0: <Table of size 2 x 1> > terminate called after throwing an instance of 'std::runtime_error' > terminate called after throwing an instance of 'std::runtime_error' > terminate called after throwing an instance of 'std::runtime_error' > what(): > > *** ------------------------------------------------------------------------- > *** DOLFIN encountered an error. If you are not able to resolve this issue > *** using the information listed below, you can ask for help at > *** > *** https://answers.launchpad.net/dolfin > *** > *** Remember to include the error message listed below and, if possible, > *** include a *minimal* running example to reproduce the error. > *** > *** ------------------------------------------------------------------------- > *** Error: Unable to solve linear system using LU factorization. > *** Reason: Unknown LU method "cholesky". Use list_lu_solver_methods() to > list available LU methods. > *** Where: This error was encountered inside LUSolver.cpp. > *** ------------------------------------------------------------------------- > > what(): > > *** ------------------------------------------------------------------------- > *** DOLFIN encountered an error. If you are not able to resolve this issue > *** using the information listed below, you can ask for help at > *** > *** https://answers.launchpad.net/dolfin > *** > *** Remember to include the error message listed below and, if possible, > *** include a *minimal* running example to reproduce the error. > *** > *** ------------------------------------------------------------------------- > *** Error: Unable to solve linear system using LU factorization. > *** Reason: Unknown LU method "cholesky". Use list_lu_solver_methods() to > list available LU methods. > *** Where: This error was encountered inside LUSolver.cpp. > *** ------------------------------------------------------------------------- > > what(): > > *** ------------------------------------------------------------------------- > *** DOLFIN encountered an error. If you are not able to resolve this issue > *** using the information listed below, you can ask for help at > *** > *** https://answers.launchpad.net/dolfin > *** > *** Remember to include the error message listed below and, if possible, > *** include a *minimal* running example to reproduce the error. > *** > *** ------------------------------------------------------------------------- > *** Error: Unable to solve linear system using LU factorization. > *** Reason: Unknown LU method "cholesky". Use list_lu_solver_methods() to > list available LU methods. > *** Where: This error was encountered inside LUSolver.cpp. > *** ------------------------------------------------------------------------- > > [martinal-hjemme:20824] *** Process received signal *** > [martinal-hjemme:20822] *** Process received signal *** > [martinal-hjemme:20822] Signal: Aborted (6) > [martinal-hjemme:20822] Signal code: (-6) > [martinal-hjemme:20823] *** Process received signal *** > [martinal-hjemme:20823] Signal: Aborted (6) > [martinal-hjemme:20823] Signal code: (-6) > [martinal-hjemme:20824] Signal: Aborted (6) > [martinal-hjemme:20824] Signal code: (-6) > [martinal-hjemme:20822] [ 0] /lib/x86_64-linux-gnu/libc.so.6(+0x36420) > [0x2b7153a47420] > [martinal-hjemme:20822] [ 1] /lib/x86_64-linux-gnu/libc.so.6(gsignal+0x35) > [0x2b7153a473a5] > [martinal-hjemme:20822] [ 2] /lib/x86_64-linux-gnu/libc.so.6(abort+0x17b) > [0x2b7153a4ab0b] > [martinal-hjemme:20822] [ 3] > /usr/lib/x86_64-linux-gnu/libstdc++.so.6(_ZN9__gnu_cxx27__verbose_terminate_handlerEv+0x11d) > [0x2b71535aed7d] > [martinal-hjemme:20822] [ 4] > /usr/lib/x86_64-linux-gnu/libstdc++.so.6(+0xb9f26) [0x2b71535acf26] > [martinal-hjemme:20822] [ 5] > /usr/lib/x86_64-linux-gnu/libstdc++.so.6(+0xb9f53) [0x2b71535acf53] > [martinal-hjemme:20822] [ 6] > /usr/lib/x86_64-linux-gnu/libstdc++.so.6(+0xba04e) [0x2b71535ad04e] > [martinal-hjemme:20822] [ 7] > /home/martinal/opt/fenics/dorsal-unstable/lib/libdolfin.so.1.0(_ZNK6dolfin6Logger12dolfin_errorESsSsSs+0x81c) > [0x2b71529fedfc] > [martinal-hjemme:20822] [ 8] > /home/martinal/opt/fenics/dorsal-unstable/lib/libdolfin.so.1.0(_ZN6dolfin12dolfin_errorESsSsSsz+0x138) > [0x2b71529fa7c8] > [martinal-hjemme:20822] [ 9] > /home/martinal/opt/fenics/dorsal-unstable/lib/libdolfin.so.1.0(_ZN6dolfin8LUSolver4initESs+0x21e) > [0x2b71529cd2fe] > [martinal-hjemme:20822] [10] > /home/martinal/opt/fenics/dorsal-unstable/lib/libdolfin.so.1.0(_ZN6dolfin8LUSolverC2ESs+0x48) > [0x2b71529cdb88] > [martinal-hjemme:20822] [11] ./demo_sym-dirichlet-bc(main+0x423) [0x4134e3] > [martinal-hjemme:20822] [12] > /lib/x86_64-linux-gnu/libc.so.6(__libc_start_main+0xed) [0x2b7153a3230d] > [martinal-hjemme:20822] [13] ./demo_sym-dirichlet-bc() [0x413b6d] > [martinal-hjemme:20823] [ 0] /lib/x86_64-linux-gnu/libc.so.6(+0x36420) > [0x2b5f8a57f420] > [martinal-hjemme:20823] [ 1] /lib/x86_64-linux-gnu/libc.so.6(gsignal+0x35) > [0x2b5f8a57f3a5] > [martinal-hjemme:20823] [ 2] /lib/x86_64-linux-gnu/libc.so.6(abort+0x17b) > [0x2b5f8a582b0b] > [martinal-hjemme:20823] [ 3] > /usr/lib/x86_64-linux-gnu/libstdc++.so.6(_ZN9__gnu_cxx27__verbose_terminate_handlerEv+0x11d) > [0x2b5f8a0e6d7d] > [martinal-hjemme:20823] [ 4] > /usr/lib/x86_64-linux-gnu/libstdc++.so.6(+0xb9f26) [0x2b5f8a0e4f26] > [martinal-hjemme:20823] [ 5] > /usr/lib/x86_64-linux-gnu/libstdc++.so.6(+0xb9f53) [0x2b5f8a0e4f53] > [martinal-hjemme:20823] [ 6] > /usr/lib/x86_64-linux-gnu/libstdc++.so.6(+0xba04e) [0x2b5f8a0e504e] > [martinal-hjemme:20823] [ 7] > /home/martinal/opt/fenics/dorsal-unstable/lib/libdolfin.so.1.0(_ZNK6dolfin6Logger12dolfin_errorESsSsSs+0x81c) > [0x2b5f89536dfc] > [martinal-hjemme:20823] [ 8] > /home/martinal/opt/fenics/dorsal-unstable/lib/libdolfin.so.1.0(_ZN6dolfin12dolfin_errorESsSsSsz+0x138) > [0x2b5f895327c8] > [martinal-hjemme:20823] [ 9] > /home/martinal/opt/fenics/dorsal-unstable/lib/libdolfin.so.1.0(_ZN6dolfin8LUSolver4initESs+0x21e) > [0x2b5f895052fe] > [martinal-hjemme:20823] [10] > /home/martinal/opt/fenics/dorsal-unstable/lib/libdolfin.so.1.0(_ZN6dolfin8LUSolverC2ESs+0x48) > [0x2b5f89505b88] > [martinal-hjemme:20823] [11] ./demo_sym-dirichlet-bc(main+0x423) [0x4134e3] > [martinal-hjemme:20823] [12] > /lib/x86_64-linux-gnu/libc.so.6(__libc_start_main+0xed) [0x2b5f8a56a30d] > [martinal-hjemme:20823] [13] ./demo_sym-dirichlet-bc() [0x413b6d] > [martinal-hjemme:20823] *** End of error message *** > [martinal-hjemme:20822] *** End of error message *** > [martinal-hjemme:20824] [ 0] /lib/x86_64-linux-gnu/libc.so.6(+0x36420) > [0x2af0a1456420] > [martinal-hjemme:20824] [ 1] /lib/x86_64-linux-gnu/libc.so.6(gsignal+0x35) > [0x2af0a14563a5] > [martinal-hjemme:20824] [ 2] /lib/x86_64-linux-gnu/libc.so.6(abort+0x17b) > [0x2af0a1459b0b] > [martinal-hjemme:20824] [ 3] > /usr/lib/x86_64-linux-gnu/libstdc++.so.6(_ZN9__gnu_cxx27__verbose_terminate_handlerEv+0x11d) > [0x2af0a0fbdd7d] > [martinal-hjemme:20824] [ 4] > /usr/lib/x86_64-linux-gnu/libstdc++.so.6(+0xb9f26) [0x2af0a0fbbf26] > [martinal-hjemme:20824] [ 5] > /usr/lib/x86_64-linux-gnu/libstdc++.so.6(+0xb9f53) [0x2af0a0fbbf53] > [martinal-hjemme:20824] [ 6] > /usr/lib/x86_64-linux-gnu/libstdc++.so.6(+0xba04e) [0x2af0a0fbc04e] > [martinal-hjemme:20824] [ 7] > /home/martinal/opt/fenics/dorsal-unstable/lib/libdolfin.so.1.0(_ZNK6dolfin6Logger12dolfin_errorESsSsSs+0x81c) > [0x2af0a040ddfc] > [martinal-hjemme:20824] [ 8] > /home/martinal/opt/fenics/dorsal-unstable/lib/libdolfin.so.1.0(_ZN6dolfin12dolfin_errorESsSsSsz+0x138) > [0x2af0a04097c8] > [martinal-hjemme:20824] [ 9] > /home/martinal/opt/fenics/dorsal-unstable/lib/libdolfin.so.1.0(_ZN6dolfin8LUSolver4initESs+0x21e) > [0x2af0a03dc2fe] > [martinal-hjemme:20824] [10] > /home/martinal/opt/fenics/dorsal-unstable/lib/libdolfin.so.1.0(_ZN6dolfin8LUSolverC2ESs+0x48) > [0x2af0a03dcb88] > [martinal-hjemme:20824] [11] ./demo_sym-dirichlet-bc(main+0x423) [0x4134e3] > [martinal-hjemme:20824] [12] > /lib/x86_64-linux-gnu/libc.so.6(__libc_start_main+0xed) [0x2af0a144130d] > [martinal-hjemme:20824] [13] ./demo_sym-dirichlet-bc() [0x413b6d] > [martinal-hjemme:20824] *** End of error message *** > -------------------------------------------------------------------------- > mpirun noticed that process rank 0 with PID 20822 on node martinal-hjemme > exited on signal 6 (Aborted). > -------------------------------------------------------------------------- > 2 total processes killed (some possibly by mpirun during cleanup) > > _______________________________________________ Mailing list: https://launchpad.net/~dolfin Post to : [email protected] Unsubscribe : https://launchpad.net/~dolfin More help : https://help.launchpad.net/ListHelp
