The linux64-exp buildbot hangs on SystemAssembler test when running without PETSc:
http://www.fenicsproject.org:8080/builders/dolfin-linux64-exp/builds/925/steps/dolfin%20check/logs/stdio I get the error below when running the test manually on the buildbot. Johannes johannr@limbo:python$ mpirun -np 3 python SystemAssembler.py Process 0: DOLFIN_NOPLOT set, plotting disabled. Testing class SystemAssembler ----------------------------- Process 0: Number of global vertices: 125 Process 0: Number of global cells: 384 Process 1: DOLFIN_NOPLOT set, plotting disabled. Testing class SystemAssembler ----------------------------- Process 2: DOLFIN_NOPLOT set, plotting disabled. Testing class SystemAssembler ----------------------------- Process 0: Partitioned mesh, edge cut is 59. Process 1: Partitioned mesh, edge cut is 59. Process 2: Partitioned mesh, edge cut is 59. EFIXME: This unit test does not work in parallel, skipping .EFIXME: This unit test does not work in parallel, skipping .FFIXME: This unit test does not work in parallel, skipping .Process 1: Partitioned mesh, edge cut is 59. Process 0: Number of global vertices: 125 Process 0: Number of global cells: 384 Process 0: Partitioned mesh, edge cut is 59. Process 2: Partitioned mesh, edge cut is 59. EE ====================================================================== ERROR: test_cell_assembly (__main__.TestSystemAssembler) ---------------------------------------------------------------------- Traceback (most recent call last): File "SystemAssembler.py", line 51, in test_cell_assembly A, b = assemble_system(a, L) File "/work/fenics/buildbots/main/fenics/lib/python2.6/site-packages/dolfin/fem/assembling.py", line 283, in assemble_system finalize_tensor) File "/work/fenics/buildbots/main/fenics/lib/python2.6/site-packages/dolfin/cpp.py", line 18382, in assemble_system return _cpp.assemble_system(*args) RuntimeError: *** ------------------------------------------------------------------------- *** DOLFIN encountered an error. If you are not able to resolve this issue *** using the information listed below, you can ask for help at *** *** https://answers.launchpad.net/dolfin *** *** Remember to include the error message listed below and, if possible, *** include a *minimal* running example to reproduce the error. *** *** ------------------------------------------------------------------------- *** Error: Unable to resize uBLAS vector. *** Reason: Distributed vectors not supported by uBLAS backend. *** Where: This error was encountered inside uBLASVector.cpp. *** ------------------------------------------------------------------------- ====================================================================== ERROR: Test assembly over subdomains with markers stored as part of mesh ---------------------------------------------------------------------- Traceback (most recent call last): File "SystemAssembler.py", line 147, in test_subdomain_assembly_meshdomains A0, b0 = assemble_system(a0, L0) File "/work/fenics/buildbots/main/fenics/lib/python2.6/site-packages/dolfin/fem/assembling.py", line 283, in assemble_system finalize_tensor) File "/work/fenics/buildbots/main/fenics/lib/python2.6/site-packages/dolfin/cpp.py", line 18382, in assemble_system return _cpp.assemble_system(*args) RuntimeError: *** ------------------------------------------------------------------------- *** DOLFIN encountered an error. If you are not able to resolve this issue *** using the information listed below, you can ask for help at *** *** https://answers.launchpad.net/dolfin *** *** Remember to include the error message listed below and, if possible, *** include a *minimal* running example to reproduce the error. *** *** ------------------------------------------------------------------------- *** Error: Unable to resize uBLAS vector. *** Reason: Distributed vectors not supported by uBLAS backend. *** Where: This error was encountered inside uBLASVector.cpp. *** ------------------------------------------------------------------------- ---------------------------------------------------------------------- Ran 3 tests in 0.198s FAILED (errors=2) ====================================================================== ERROR: test_cell_assembly (__main__.TestSystemAssembler) ---------------------------------------------------------------------- Traceback (most recent call last): File "SystemAssembler.py", line 51, in test_cell_assembly A, b = assemble_system(a, L) File "/work/fenics/buildbots/main/fenics/lib/python2.6/site-packages/dolfin/fem/assembling.py", line 283, in assemble_system finalize_tensor) File "/work/fenics/buildbots/main/fenics/lib/python2.6/site-packages/dolfin/cpp.py", line 18382, in assemble_system return _cpp.assemble_system(*args) RuntimeError: *** ------------------------------------------------------------------------- *** DOLFIN encountered an error. If you are not able to resolve this issue *** using the information listed below, you can ask for help at *** *** https://answers.launchpad.net/dolfin *** *** Remember to include the error message listed below and, if possible, *** include a *minimal* running example to reproduce the error. *** *** ------------------------------------------------------------------------- *** Error: Unable to resize uBLAS vector. *** Reason: Distributed vectors not supported by uBLAS backend. *** Where: This error was encountered inside uBLASVector.cpp. *** ------------------------------------------------------------------------- ====================================================================== ERROR: Test assembly over subdomains with markers stored as part of mesh ---------------------------------------------------------------------- Traceback (most recent call last): File "SystemAssembler.py", line 147, in test_subdomain_assembly_meshdomains A0, b0 = assemble_system(a0, L0) File "/work/fenics/buildbots/main/fenics/lib/python2.6/site-packages/dolfin/fem/assembling.py", line 283, in assemble_system finalize_tensor) File "/work/fenics/buildbots/main/fenics/lib/python2.6/site-packages/dolfin/cpp.py", line 18382, in assemble_system return _cpp.assemble_system(*args) RuntimeError: *** ------------------------------------------------------------------------- *** DOLFIN encountered an error. If you are not able to resolve this issue *** using the information listed below, you can ask for help at *** *** https://answers.launchpad.net/dolfin *** *** Remember to include the error message listed below and, if possible, *** include a *minimal* running example to reproduce the error. *** *** ------------------------------------------------------------------------- *** Error: Unable to resize uBLAS vector. *** Reason: Distributed vectors not supported by uBLAS backend. *** Where: This error was encountered inside uBLASVector.cpp. *** ------------------------------------------------------------------------- ---------------------------------------------------------------------- Ran 3 tests in 0.192s FAILED (errors=2) ^Cmpirun: killing job... -------------------------------------------------------------------------- mpirun was unable to cleanly terminate the daemons on the nodes shown below. Additional manual cleanup may be required - please refer to the "orte-clean" tool for assistance. -------------------------------------------------------------------------- _______________________________________________ Mailing list: https://launchpad.net/~dolfin Post to : dolfin@lists.launchpad.net Unsubscribe : https://launchpad.net/~dolfin More help : https://help.launchpad.net/ListHelp
