I will top post here ...

got a similar issue with mariadb a while ago after upgrading from 10.1 to 10.2
lots of warnings about aborted connections in the logs.

after digging into this issue the culprit was a new default setting value in the newer maridb server.

during the update the log_warnings changed from 1 to 2 therefore showing lots of aborted connection notices in the logs

changing the log_warnings back from 2 to 1 solved this issue

https://mariadb.com/kb/en/library/upgrading-from-mariadb-101-to-mariadb-102/
https://dev.mysql.com/doc/refman/5.7/en/server-system-variables.html#sysvar_log_warnings

perhaps this might help someone?

greetings
Becki

Am 30.10.2019 um 22:14 schrieb Gerald Galster via dovecot:
We also spotted these sql connections getting aborted, upon upgrading MySQL 
from 5.6 to 5.7. (Going back to 5.6 we don't see them!)
I have a mailserver running MySQL 5.6.44 which is not very busy that logs these 
warnings.
Another busy one running MySQL 5.6.45 does not log any warnings.

MySQL interactive-/wait_timeout is 28800 (8 hours), which is more than enough 
time to wait for a query. Connections are closed way earlier.

dovecot and postfix use the same database and mysql user, so I created a new 
user for dovecot.
syslog shows a few communication packet errors but these are all from postfix, 
none from dovecot so far.

It seems connections are closed after 60s of inactivity (vmail is postfix, 
vmail2 is dovecot):

mysql> select * from INFORMATION_SCHEMA.PROCESSLIST where USER like 'vmail%';
+-----+--------+-----------------+-------+---------+------+-------+------+---------+-----------+---------------+------+
| ID  | USER   | HOST            | DB    | COMMAND | TIME | STATE | INFO | 
TIME_MS | ROWS_SENT | ROWS_EXAMINED | TID  |
+-----+--------+-----------------+-------+---------+------+-------+------+---------+-----------+---------------+------+
| 147 | vmail  | localhost       | vmail | Sleep   |    1 |       | NULL |     
566 |         0 |             0 | 6664 |
| 148 | vmail  | localhost       | vmail | Sleep   |    1 |       | NULL |     
564 |         0 |             0 | 6069 |
| 149 | vmail  | localhost       | vmail | Sleep   |    1 |       | NULL |     
566 |         0 |             0 | 6037 |
| 151 | vmail2 | 127.0.0.2:35058 | vmail | Sleep   |   51 |       | NULL |   
50872 |         1 |             1 | 6072 |
| 152 | vmail2 | 127.0.0.2:35060 | vmail | Sleep   |   60 |       | NULL |   
59324 |         1 |             1 | 6025 |
| 150 | vmail  | localhost       | vmail | Sleep   |    1 |       | NULL |     
565 |         0 |             0 | 6071 |
+-----+--------+-----------------+-------+---------+------+-------+------+---------+-----------+---------------+------+
6 rows in set (0.00 sec)

mysql> select * from INFORMATION_SCHEMA.PROCESSLIST where USER like 'vmail%';
+-----+--------+-----------------+-------+---------+------+-------+------+---------+-----------+---------------+------+
| ID  | USER   | HOST            | DB    | COMMAND | TIME | STATE | INFO | 
TIME_MS | ROWS_SENT | ROWS_EXAMINED | TID  |
+-----+--------+-----------------+-------+---------+------+-------+------+---------+-----------+---------------+------+
| 147 | vmail  | localhost       | vmail | Sleep   |    2 |       | NULL |    
1775 |         0 |             0 | 6664 |
| 148 | vmail  | localhost       | vmail | Sleep   |    2 |       | NULL |    
1772 |         0 |             0 | 6069 |
| 149 | vmail  | localhost       | vmail | Sleep   |    2 |       | NULL |    
1774 |         0 |             0 | 6037 |
| 151 | vmail2 | 127.0.0.2:35058 | vmail | Sleep   |   52 |       | NULL |   
52080 |         1 |             1 | 6072 |
| 150 | vmail  | localhost       | vmail | Sleep   |    2 |       | NULL |    
1773 |         0 |             0 | 6071 |
+-----+--------+-----------------+-------+---------+------+-------+------+---------+-----------+---------------+------+
5 rows in set (0.00 sec)

Only vmail (postfix) has dropped connections (you need performance schema 
enabled):

mysql> SELECT ess.user, ess.host, (a.total_connections - a.current_connections) - 
ess.count_star as not_closed, ((a.total_connections - a.current_connections) - 
ess.count_star) * 100 / (a.total_connections - a.current_connections) as 
pct_not_closed FROM 
performance_schema.events_statements_summary_by_account_by_event_name ess JOIN 
performance_schema.accounts a on (ess.user = a.user and ess.host = a.host)  WHERE 
ess.event_name = 'statement/com/quit' AND (a.total_connections - 
a.current_connections) > ess.count_star;
+-------+-----------+------------+----------------+
| user  | host      | not_closed | pct_not_closed |
+-------+-----------+------------+----------------+
| vmail | localhost |         11 |        15.4930 |
+-------+-----------+------------+----------------+
1 row in set (0.02 sec)


My setup is different concerning quotas, they are not stored in MySQL. So if 
you don't use postfix with the same user/database the source for your warnings 
might be quota. For me it seems to be related to postfix.

Don't know if this helps, there is a new option in 5.7
https://dev.mysql.com/doc/refman/5.7/en/x-plugin-options-system-variables.html#sysvar_mysqlx_idle_worker_thread_timeout

Gerald


Turning on mysql general query logging we can see it is Dovecot's mysql 
connections that inquire about or update quota usage in particular:


*** /logs//mysql.log ***
2019-10-30T10:52:22.624690-07:00            2 Connect   dovecot@localhost on 
npomail using Socket

2019-10-30T10:52:40.019780-07:00            2 Query     SELECT bytes FROM 
quota2 WHERE username = 'a@bla'
2019-10-30T10:52:40.020948-07:00            2 Query     SELECT messages FROM 
quota2 WHERE username = 'a@bla'

2019-10-30T10:53:40.113374-07:00 2 [Note] Aborted connection 2 to db: 'npomail' 
user: 'dovecot' host: 'localhost' (Got an error reading communication packets)


Increasing mysqld's net_read_timeout and net_write_timeout values to 3600 does 
not stop the aborted connections.

It seems asymptomatic. If the connection to mysql is still there to do quota 
operations, Dovecot seems to use it. If it's been aborted by the server, 
Dovecot seems to just (re)connect. . . But I'd love to help find the root or 
file a bug report or learn what it is we've configured wrong. . .

Benjamin

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