Here is the catalina.out log file. I tried upgrading to the latest version of tomcat but I'm getting the same thing. It never fully starts (it always stops at the same point). Any suggestions would be appreciated. Thanks -- Larry
12-Dec-2016 11:15:54.735 INFO [main] org.apache.catalina.startup.VersionLoggerListener.log Server version: Apache Tomcat/8.5.9 12-Dec-2016 11:15:54.739 INFO [main] org.apache.catalina.startup.VersionLoggerListener.log Server built: Dec 5 2016 20:18:12 UTC 12-Dec-2016 11:15:54.739 INFO [main] org.apache.catalina.startup.VersionLoggerListener.log Server number: 8.5.9.0 12-Dec-2016 11:15:54.739 INFO [main] org.apache.catalina.startup.VersionLoggerListener.log OS Name: Linux 12-Dec-2016 11:15:54.739 INFO [main] org.apache.catalina.startup.VersionLoggerListener.log OS Version: 2.6.32-642.11.1.el6.x86_64 12-Dec-2016 11:15:54.740 INFO [main] org.apache.catalina.startup.VersionLoggerListener.log Architecture: amd64 12-Dec-2016 11:15:54.740 INFO [main] org.apache.catalina.startup.VersionLoggerListener.log Java Home: /usr/java/jdk1.8.0/jre 12-Dec-2016 11:15:54.740 INFO [main] org.apache.catalina.startup.VersionLoggerListener.log JVM Version: 1.8.0-b132 12-Dec-2016 11:15:54.740 INFO [main] org.apache.catalina.startup.VersionLoggerListener.log JVM Vendor: Oracle Corporation 12-Dec-2016 11:15:54.741 INFO [main] org.apache.catalina.startup.VersionLoggerListener.log CATALINA_BASE: /usr/local/apache-tomcat-8.5.9 12-Dec-2016 11:15:54.741 INFO [main] org.apache.catalina.startup.VersionLoggerListener.log CATALINA_HOME: /usr/local/apache-tomcat-8.5.9 12-Dec-2016 11:15:54.741 INFO [main] org.apache.catalina.startup.VersionLoggerListener.log Command line argument: -Djava.util.logging.config.file=/usr/local/apache-tomcat-8.5.9/conf/logging.properties 12-Dec-2016 11:15:54.742 INFO [main] org.apache.catalina.startup.VersionLoggerListener.log Command line argument: -Djava.util.logging.manager=org.apache.juli.ClassLoaderLogManager 12-Dec-2016 11:15:54.742 INFO [main] org.apache.catalina.startup.VersionLoggerListener.log Command line argument: -Djdk.tls.ephemeralDHKeySize=2048 12-Dec-2016 11:15:54.742 INFO [main] org.apache.catalina.startup.VersionLoggerListener.log Command line argument: -Djava.protocol.handler.pkgs=org.apache.catalina.webresources 12-Dec-2016 11:15:54.742 INFO [main] org.apache.catalina.startup.VersionLoggerListener.log Command line argument: -Dcatalina.base=/usr/local/apache-tomcat-8.5.9 12-Dec-2016 11:15:54.743 INFO [main] org.apache.catalina.startup.VersionLoggerListener.log Command line argument: -Dcatalina.home=/usr/local/apache-tomcat-8.5.9 12-Dec-2016 11:15:54.743 INFO [main] org.apache.catalina.startup.VersionLoggerListener.log Command line argument: -Djava.io.tmpdir=/usr/local/apache-tomcat-8.5.9/temp 12-Dec-2016 11:15:54.743 INFO [main] org.apache.catalina.core.AprLifecycleListener.lifecycleEvent The APR based Apache Tomcat Native library which allows optimal performance in production environments was not found on the java.library.p ath: /usr/java/packages/lib/amd64:/usr/lib64:/lib64:/lib:/usr/lib 12-Dec-2016 11:15:54.996 INFO [main] org.apache.coyote.AbstractProtocol.init Initializing ProtocolHandler ["http-nio-8080"] 12-Dec-2016 11:15:55.030 INFO [main] org.apache.tomcat.util.net.NioSelectorPool.getSharedSelector Using a shared selector for servlet write/read 12-Dec-2016 11:15:55.034 INFO [main] org.apache.coyote.AbstractProtocol.init Initializing ProtocolHandler ["ajp-nio-8009"] 12-Dec-2016 11:15:55.035 INFO [main] org.apache.tomcat.util.net.NioSelectorPool.getSharedSelector Using a shared selector for servlet write/read 12-Dec-2016 11:15:55.036 INFO [main] org.apache.catalina.startup.Catalina.load Initialization processed in 1014 ms 12-Dec-2016 11:15:55.074 INFO [main] org.apache.catalina.core.StandardService.startInternal Starting service Catalina 12-Dec-2016 11:15:55.074 INFO [main] org.apache.catalina.core.StandardEngine.startInternal Starting Servlet Engine: Apache Tomcat/8.5.9 12-Dec-2016 11:15:55.086 INFO [localhost-startStop-1] org.apache.catalina.startup.HostConfig.deployDirectory Deploying web application directory /usr/local/apache-tomcat-8.5.9/webapps/swordv2 12-Dec-2016 11:16:00.998 INFO [localhost-startStop-1] org.apache.jasper.servlet.TldScanner.scanJars At least one JAR was scanned for TLDs yet contained no TLDs. Enable debug logging for this logger for a complete list of JARs that were scanned but no TLDs were found in them. Skipping unneeded JARs during scanning can improve startup time and JSP compilation time. INFO [localhost-startStop-1] (DSpaceKernelInit.java:53) - Created new kernel: DSpaceKernel:org.dspace:name=7d370be3-c952-4c02-8d6b-868ab879d25b,type=DSpaceKernel:lastLoad=null:loadTime=0:running=false:kernel=null INFO [localhost-startStop-1] (DSpaceConfigurationService.java:506) - Started up configuration service and loaded settings: ConfigDir=/dspace/config, Size=553 INFO [localhost-startStop-1] (AbstractApplicationContext.java:515) - Refreshing org.springframework.context.support.ClassPathXmlApplicationContext@2c0826be: startup date [Mon Dec 12 11:16:01 CST 2016]; root of context hierarchy INFO [localhost-startStop-1] (XmlBeanDefinitionReader.java:316) - Loading XML bean definitions from class path resource [spring/spring-dspace-applicationContext.xml] INFO [localhost-startStop-1] (XmlBeanDefinitionReader.java:316) - Loading XML bean definitions from file [/usr/local/apache-tomcat-8.5.9/webapps/swordv2/WEB-INF/classes/spring/spring-dspace-addon-example-services.xml] INFO [localhost-startStop-1] (XmlBeanDefinitionReader.java:316) - Loading XML bean definitions from URL [jar:file:/usr/local/apache-tomcat-8.5.9/webapps/swordv2/WEB-INF/lib/additions-6.0.jar!/spring/spring-dspace-addon-example-services .xml] INFO [localhost-startStop-1] (DefaultListableBeanFactory.java:675) - Overriding bean definition for bean 'org.dspace.example.Example': replacing [Generic bean: class [org.dspace.example.impl.ExampleImpl]; scope=; abstract=false; lazyIn it=false; autowireMode=0; dependencyCheck=0; autowireCandidate=false; primary=false; factoryBeanName=null; factoryMethodName=null; initMethodName=null; destroyMethodName=null; defined in file [/usr/local/apache-tomcat-8.5.9/webapps/swor dv2/WEB-INF/classes/spring/spring-dspace-addon-example-services.xml]] with [Generic bean: class [org.dspace.example.impl.ExampleImpl]; scope=; abstract=false; lazyInit=false; autowireMode=0; dependencyCheck=0; autowireCandidate=false; p rimary=false; factoryBeanName=null; factoryMethodName=null; initMethodName=null; destroyMethodName=null; defined in URL [jar:file:/usr/local/apache-tomcat-8.5.9/webapps/swordv2/WEB-INF/lib/additions-6.0.jar!/spring/spring-dspace-addon-e xample-services.xml]] INFO [localhost-startStop-1] (XmlBeanDefinitionReader.java:316) - Loading XML bean definitions from URL [jar:file:/usr/local/apache-tomcat-8.5.9/webapps/swordv2/WEB-INF/lib/dspace-api-6.0.jar!/spring/spring-dspace-addon-sherpa-services .xml] INFO [localhost-startStop-1] (XmlBeanDefinitionReader.java:316) - Loading XML bean definitions from URL [jar:file:/usr/local/apache-tomcat-8.5.9/webapps/swordv2/WEB-INF/lib/dspace-api-6.0.jar!/spring/spring-dspace-addon-sherpa-configur ation-services.xml] INFO [localhost-startStop-1] (XmlBeanDefinitionReader.java:316) - Loading XML bean definitions from URL [jar:file:/usr/local/apache-tomcat-8.5.9/webapps/swordv2/WEB-INF/lib/dspace-api-6.0.jar!/spring/spring-dspace-addon-import-services .xml] INFO [localhost-startStop-1] (XmlBeanDefinitionReader.java:316) - Loading XML bean definitions from URL [jar:file:/usr/local/apache-tomcat-8.5.9/webapps/swordv2/WEB-INF/lib/dspace-api-6.0.jar!/spring/spring-dspace-addon-discovery-servi ces.xml] INFO [localhost-startStop-1] (XmlBeanDefinitionReader.java:316) - Loading XML bean definitions from URL [jar:file:/usr/local/apache-tomcat-8.5.9/webapps/swordv2/WEB-INF/lib/dspace-api-6.0.jar!/spring/spring-dspace-addon-requestitem-ser vices.xml] INFO [localhost-startStop-1] (XmlBeanDefinitionReader.java:316) - Loading XML bean definitions from URL [jar:file:/usr/local/apache-tomcat-8.5.9/webapps/swordv2/WEB-INF/lib/dspace-api-6.0.jar!/spring/spring-dspace-core-services.xml] INFO [localhost-startStop-1] (XmlBeanDefinitionReader.java:316) - Loading XML bean definitions from URL [jar:file:/usr/local/apache-tomcat-8.5.9/webapps/swordv2/WEB-INF/lib/dspace-services-6.0.jar!/spring/spring-dspace-core-services.xm l] INFO [localhost-startStop-1] (XmlBeanDefinitionReader.java:316) - Loading XML bean definitions from file [/dspace/config/spring/api/versioning-service.xml] INFO [localhost-startStop-1] (XmlBeanDefinitionReader.java:316) - Loading XML bean definitions from file [/dspace/config/spring/api/bitstore.xml] INFO [localhost-startStop-1] (XmlBeanDefinitionReader.java:316) - Loading XML bean definitions from file [/dspace/config/spring/api/rdf.xml] INFO [localhost-startStop-1] (XmlBeanDefinitionReader.java:316) - Loading XML bean definitions from file [/dspace/config/spring/api/core-dao-services.xml] INFO [localhost-startStop-1] (XmlBeanDefinitionReader.java:316) - Loading XML bean definitions from file [/dspace/config/spring/api/workflow-actions.xml] INFO [localhost-startStop-1] (XmlBeanDefinitionReader.java:316) - Loading XML bean definitions from file [/dspace/config/spring/api/discovery.xml] INFO [localhost-startStop-1] (XmlBeanDefinitionReader.java:316) - Loading XML bean definitions from file [/dspace/config/spring/api/pubmed-integration.xml] INFO [localhost-startStop-1] (XmlBeanDefinitionReader.java:316) - Loading XML bean definitions from file [/dspace/config/spring/api/requestitem.xml] INFO [localhost-startStop-1] (DefaultListableBeanFactory.java:675) - Overriding bean definition for bean 'org.dspace.app.requestitem.RequestItemAuthorExtractor': replacing [Generic bean: class [org.dspace.app.requestitem.RequestItemMet adataStrategy]; scope=; abstract=false; lazyInit=false; autowireMode=0; dependencyCheck=0; autowireCandidate=false; primary=false; factoryBeanName=null; factoryMethodName=null; initMethodName=null; destroyMethodName=null; defined in URL [jar:file:/usr/local/apache-tomcat-8.5.9/webapps/swordv2/WEB-INF/lib/dspace-api-6.0.jar!/spring/spring-dspace-addon-requestitem-services.xml]] with [Generic bean: class [org.dspace.app.requestitem.RequestItemMetadataStrategy]; scope=; abstract=false; lazyInit=false; autowireMode=0; dependencyCheck=0; autowireCandidate=false; primary=false; factoryBeanName=null; factoryMethodName=null; initMethodName=null; destroyMethodName=null; defined in file [/dspace/config/spring /api/requestitem.xml]] INFO [localhost-startStop-1] (XmlBeanDefinitionReader.java:316) - Loading XML bean definitions from file [/dspace/config/spring/api/sherpa.xml] INFO [localhost-startStop-1] (DefaultListableBeanFactory.java:675) - Overriding bean definition for bean 'org.dspace.app.sherpa.submit.SHERPASubmitConfigurationService': replacing [Generic bean: class [org.dspace.app.sherpa.submit.SHER PASubmitConfigurationService]; scope=; abstract=false; lazyInit=false; autowireMode=0; dependencyCheck=0; autowireCandidate=true; primary=false; factoryBeanName=null; factoryMethodName=null; initMethodName=null; destroyMethodName=null; defined in URL [jar:file:/usr/local/apache-tomcat-8.5.9/webapps/swordv2/WEB-INF/lib/dspace-api-6.0.jar!/spring/spring-dspace-addon-sherpa-configuration-services.xml]] with [Generic bean: class [org.dspace.app.sherpa.submit.SHERPASubmitC onfigurationService]; scope=; abstract=false; lazyInit=false; autowireMode=0; dependencyCheck=0; autowireCandidate=true; primary=false; factoryBeanName=null; factoryMethodName=null; initMethodName=null; destroyMethodName=null; defined i n file [/dspace/config/spring/api/sherpa.xml]] INFO [localhost-startStop-1] (XmlBeanDefinitionReader.java:316) - Loading XML bean definitions from file [/dspace/config/spring/api/bte.xml] INFO [localhost-startStop-1] (XmlBeanDefinitionReader.java:316) - Loading XML bean definitions from file [/dspace/config/spring/api/item-marking.xml] INFO [localhost-startStop-1] (XmlBeanDefinitionReader.java:316) - Loading XML bean definitions from file [/dspace/config/spring/api/discovery-solr.xml] INFO [localhost-startStop-1] (XmlBeanDefinitionReader.java:316) - Loading XML bean definitions from file [/dspace/config/spring/api/core-hibernate.xml] INFO [localhost-startStop-1] (XmlBeanDefinitionReader.java:316) - Loading XML bean definitions from file [/dspace/config/spring/api/orcid-authority-services.xml] INFO [localhost-startStop-1] (XmlBeanDefinitionReader.java:316) - Loading XML bean definitions from file [/dspace/config/spring/api/core-services.xml] INFO [localhost-startStop-1] (XmlBeanDefinitionReader.java:316) - Loading XML bean definitions from file [/dspace/config/spring/api/core-factory-services.xml] INFO [localhost-startStop-1] (XmlBeanDefinitionReader.java:316) - Loading XML bean definitions from file [/dspace/config/spring/api/identifier-service.xml] INFO [localhost-startStop-1] (DefaultListableBeanFactory.java:675) - Overriding bean definition for bean 'org.dspace.identifier.service.IdentifierService': replacing [Generic bean: class [org.dspace.identifier.IdentifierServiceImpl]; s cope=singleton; abstract=false; lazyInit=false; autowireMode=2; dependencyCheck=0; autowireCandidate=true; primary=false; factoryBeanName=null; factoryMethodName=null; initMethodName=null; destroyMethodName=null; defined in URL [jar:fil e:/usr/local/apache-tomcat-8.5.9/webapps/swordv2/WEB-INF/lib/dspace-api-6.0.jar!/spring/spring-dspace-core-services.xml]] with [Generic bean: class [org.dspace.identifier.IdentifierServiceImpl]; scope=singleton; abstract=false; lazyInit =false; autowireMode=2; dependencyCheck=0; autowireCandidate=true; primary=false; factoryBeanName=null; factoryMethodName=null; initMethodName=null; destroyMethodName=null; defined in file [/dspace/config/spring/api/identifier-service.x ml]] INFO [localhost-startStop-1] (AutowiredAnnotationBeanPostProcessor.java:141) - JSR-330 'javax.inject.Inject' annotation found and supported for autowiring INFO [localhost-startStop-1] (AbstractApplicationContext.java:1380) - Bean 'dspaceDataSource' of type [class org.apache.commons.dbcp2.BasicDataSource] is not eligible for getting processed by all BeanPostProcessors (for example: not el igible for auto-proxying) INFO [localhost-startStop-1] (JndiObjectFactoryBean.java:244) - JNDI lookup failed - returning specified default object instead: javax.naming.NameNotFoundException: Name [jdbc/dspace] is not bound in this Context. Unable to find [jdbc] . INFO [localhost-startStop-1] (AbstractApplicationContext.java:1380) - Bean 'dataSource' of type [class org.springframework.jndi.JndiObjectFactoryBean] is not eligible for getting processed by all BeanPostProcessors (for example: not el igible for auto-proxying) INFO [localhost-startStop-1] (DefaultListableBeanFactory.java:603) - Pre-instantiating singletons in org.springframework.beans.factory.support.DefaultListableBeanFactory@22939fe8: defining beans [org.springframework.context.annotation. internalConfigurationAnnotationProcessor,org.springframework.context.annotation.internalAutowiredAnnotationProcessor,org.springframework.context.annotation.internalRequiredAnnotationProcessor,org.springframework.context.annotation.inter nalCommonAnnotationProcessor,org.springframework.context.annotation.internalPersistenceAnnotationProcessor,org.dspace.servicemanager.spring.DSpaceBeanPostProcessor#0,org.dspace.example.Example,org.dspace.app.sherpa.SHERPAService,org.dsp ace.app.sherpa.submit.SHERPASubmitService,org.dspace.app.sherpa.submit.SHERPASubmitConfigurationService,importService,PubmedImportService,PubmedMetadataFieldMapping,lookupID,org.dspace.discovery.SearchService,org.dspace.app.requestitem. RequestItemAuthorExtractor,org.dspace.identifier.service.IdentifierService,org.dspace.identifier.VersionedHandleIdentifierProvider,org.dspace.core.DBConnection,org.dspace.storage.rdbms.DatabaseRegistryUpdater#0,org.dspace.storage.rdbms. GroupServiceInitializer#0,org.dspace.storage.rdbms.PostgreSQLCryptoChecker#0,org.dspace.storage.rdbms.SiteServiceInitializer#0,org.dspace.core.LoggerServiceImpl#0,propertyPlaceholderConfigurer,dspaceConfigurationFactoryBean,org.dspace.s ervices.CachingService,org.dspace.caching.ehcache.CacheManager,org.dspace.services.SessionService,org.dspace.services.EventService,org.dspace.services.email.EmailServiceImpl,dSpaceServicesFactory,org.dspace.versioning.service.Versioning Service,org.dspace.storage.bitstore.BitstreamStorageService,localStore,s3Store,rdfFactory,org.dspace.rdf.conversion.SimpleDSORelationsConverterPlugin,org.dspace.rdf.conversion.MetadataConverterPlugin,org.dspace.rdf.conversion.StaticDSOC onverterPlugin,org.dspace.rdf.conversion.RDFConverter,org.dspace.rdf.storage.LocalURIGenerator,org.dspace.rdf.storage.HandleURIGenerator,org.dspace.rdf.storage.DOIURIGenerator,org.dspace.rdf.storage.DOIHandleURIGenerator,org.dspace.rdf. storage.RDFStorage,org.dspace.app.requestitem.dao.impl.RequestItemDAOImpl#0,org.dspace.app.util.dao.impl.WebAppDAOImpl#0,org.dspace.authorize.dao.impl.ResourcePolicyDAOImpl#0,org.dspace.checker.dao.impl.ChecksumHistoryDAOImpl#0,org.dspa ce.checker.dao.impl.ChecksumResultDAOImpl#0,org.dspace.checker.dao.impl.MostRecentChecksumDAOImpl#0,org.dspace.content.dao.impl.CollectionDAOImpl#0,org.dspace.content.dao.impl.BitstreamDAOImpl#0,org.dspace.content.dao.impl.BitstreamForm atDAOImpl#0,org.dspace.content.dao.impl.BundleDAOImpl#0,org.dspace.content.dao.impl.CommunityDAOImpl#0,org.dspace.content.dao.impl.ItemDAOImpl#0,org.dspace.content.dao.impl.MetadataFieldDAOImpl#0,org.dspace.content.dao.impl.MetadataSche maDAOImpl#0,org.dspace.content.dao.impl.MetadataValueDAOImpl#0,org.dspace.content.dao.impl.SiteDAOImpl#0,org.dspace.content.dao.impl.WorkspaceItemDAOImpl#0,org.dspace.eperson.dao.impl.EPersonDAOImpl#0,org.dspace.eperson.dao.impl.Group2G roupCacheDAOImpl#0,org.dspace.eperson.dao.impl.GroupDAOImpl#0,org.dspace.eperson.dao.impl.RegistrationDataDAOImpl#0,org.dspace.eperson.dao.impl.SubscriptionDAOImpl#0,org.dspace.handle.dao.impl.HandleDAOImpl#0,org.dspace.harvest.dao.impl .HarvestedItemDAOImpl#0,org.dspace.harvest.dao.impl.HarvestedCollectionDAOImpl#0,org.dspace.identifier.dao.impl.DOIDAOImpl#0,org.dspace.versioning.dao.impl.VersionDAOImpl#0,org.dspace.versioning.dao.impl.VersionHistoryDAOImpl#0,org.dspa ce.workflowbasic.dao.impl.BasicWorkflowItemDAOImpl#0,org.dspace.workflowbasic.dao.impl.TaskListItemDAOImpl#0,org.dspace.xmlworkflow.storedcomponents.dao.impl.ClaimedTaskDAOImpl#0,org.dspace.xmlworkflow.storedcomponents.dao.impl.Collecti onRoleDAOImpl#0,org.dspace.xmlworkflow.storedcomponents.dao.impl.InProgressUserDAOImpl#0,org.dspace.xmlworkflow.storedcomponents.dao.impl.PoolTaskDAOImpl#0,org.dspace.xmlworkflow.storedcomponents.dao.impl.WorkflowItemRoleDAOImpl#0,org.d space.xmlworkflow.storedcomponents.dao.impl.XmlWorkflowItemDAOImpl#0,claimactionAPI,reviewactionAPI,editactionAPI,finaleditactionAPI,singleuserreviewactionAPI,selectrevieweractionAPI,scorereviewactionAPI,evaluationactionAPI,autoassignac tionAPI,noUserSelectionActionAPI,assignoriginalsubmitteractionAPI,reviewaction,editaction,finaleditaction,selectrevieweraction,singleuserreviewaction,scorereviewaction,evaluationaction,claimaction,autoassignAction,noUserSelectionAction, originalSubmitterAssignAction,solrServiceResourceIndexPlugin,SolrServiceSpellIndexingPlugin,solrServiceMetadataBrowseIndexingPlugin,hasContentInOriginalBundle,org.dspace.discovery.configuration.DiscoveryConfigurationService,defaultConfi guration,homepageConfiguration,homepageTagCloudFacetConfiguration,defaultTagCloudFacetConfiguration,tagCloudConfiguration,browseTagCloudConfiguration,searchFilterTitle,searchFilterAuthor,searchFilterSubject,searchFilterIssued,searchFilt erContentInOriginalBundle,sortTitle,sortDateIssued,pubmedMetadataFieldMap,pubmedLanguageContrib,dateContrib,pubmedContrib,titleContrib,abstractContrib,authorContrib,combinedauthorList,lastNameContrib,firstNameContrib,keywordContrib,year Contrib,monthContrib,dayContrib,languageContrib,dc.title,dc.description.abstract,dc.contributor.author,dc.date.issued,dc.language.iso,dc.subject,dc.identifier.other,prefixToNamespaceMapping,maxRetry,pubmedService,org.dspace.app.itemimpo rt.BTEBatchImportService,batchImportTransformationEngine,batchImportLinearWorkflow,org.dspace.submit.lookup.SubmissionLookupService,phase1TransformationEngine,multipleDataLoader,org.dspace.submit.lookup.SubmissionLookupOutputGenerator,p hase1LinearWorkflow,mapConverter_arxivSubject,mapConverter_pubstatusPubmed,removeLastDot,phase2TransformationEngine,submissionItemDataLoader,phase2linearWorkflow,fieldMergeModifier,valueConcatenationModifier,languageCodeModifier,org.dsp ace.submit.lookup.DSpaceWorkspaceItemOutputGenerator,bibTeXDataLoader,csvDataLoader,tsvDataLoader,risDataLoader,endnoteDataLoader,oaipmhDataLoader,pubmedOnlineDataLoader,pubmedFileDataLoader,pubmedInputMap,arXivOnlineDataLoader,arXivFil eDataLoader,arxivInputMap,crossRefOnlineDataLoader,crossRefFileDataLoader,crossrefInputMap,ciniiOnlineDataLoader,ciniiFileDataLoader,ciniiInputMap,outputMap,org.dspace.app.itemmarking.ItemMarkingExtractor.type,org.dspace.app.itemmarking .ItemMarkingExtractor.availability,typeMap,collectionMap,org.dspace.util.MultiFormatDateParser,sessionFactory,dataSource,dspaceDataSource,org.dspace.authority.AuthoritySearchService,dspace.DSpaceAuthorityIndexer,AuthorityTypes,OrcidSour ce,org.dspace.app.requestitem.RequestItemServiceImpl#0,org.dspace.app.itemexport.ItemExportServiceImpl#0,org.dspace.app.itemimport.ItemImportServiceImpl#0,org.dspace.app.mediafilter.MediaFilterServiceImpl#0,org.dspace.app.sfx.SFXFileRea derServiceImpl#0,org.dspace.app.util.MetadataExposureServiceImpl#0,org.dspace.app.util.OpenSearchServiceImpl#0,org.dspace.app.util.WebAppServiceImpl#0,org.dspace.authenticate.AuthenticationServiceImpl#0,org.dspace.authorize.AuthorizeSer viceImpl#0,org.dspace.authorize.ResourcePolicyServiceImpl#0,org.dspace.authority.AuthorityValueServiceImpl#0,org.dspace.authority.AuthorityServiceImpl#0,org.dspace.checker.ChecksumHistoryServiceImpl#0,org.dspace.checker.ChecksumResultSe rviceImpl#0,org.dspace.checker.MostRecentChecksumServiceImpl#0,org.dspace.checker.SimpleReporterServiceImpl#0,org.dspace.content.CollectionServiceImpl#0,org.dspace.content.BitstreamFormatServiceImpl#0,org.dspace.content.BitstreamService Impl#0,org.dspace.content.BundleServiceImpl#0,org.dspace.content.CommunityServiceImpl#0,org.dspace.content.InstallItemServiceImpl#0,org.dspace.content.ItemServiceImpl#0,org.dspace.content.MetadataFieldServiceImpl#0, org.dspace.content.Me <http://org.dspace.content.me/> tadataSchemaServiceImpl#0,org.dspace.content.MetadataValueServiceImpl#0,org.dspace.content.SiteServiceImpl#0,org.dspace.content.SupervisedItemServiceImpl#0,org.dspace.content.WorkspaceItemServiceImpl#0,org.dspace.content.authority.Choic eAuthorityServiceImpl#0,org.dspace.content.authority.MetadataAuthorityServiceImpl#0,org.dspace.core.LegacyPluginServiceImpl#0,org.dspace.core.LicenseServiceImpl#0,org.dspace.core.NewsServiceImpl#0,org.dspace.curate.WorkflowCuratorServic eImpl#0,org.dspace.disseminate.CitationDocumentServiceImpl#0,org.dspace.embargo.EmbargoServiceImpl#0,org.dspace.eperson.AccountServiceImpl#0,org.dspace.eperson.EPersonServiceImpl#0,org.dspace.eperson.GroupServiceImpl#0,org.dspace.eperso n.RegistrationDataServiceImpl#0,org.dspace.eperson.SubscribeServiceImpl#0,org.dspace.eperson.SupervisorServiceImpl#0,org.dspace.event.EventServiceImpl#0,org.dspace.handle.HandleServiceImpl#0,org.dspace.harvest.HarvestedCollectionService Impl#0,org.dspace.harvest.HarvestedItemServiceImpl#0,org.dspace.harvest.HarvestSchedulingServiceImpl#0,org.dspace.identifier.DOIServiceImpl#0,org.dspace.license.CreativeCommonsServiceImpl#0,elasticSearchLoggerService,solrLoggerService,o rg.dspace.versioning.VersionHistoryServiceImpl#0,org.dspace.workflowbasic.TaskListItemServiceImpl#0,org.dspace.workflowbasic.BasicWorkflowItemServiceImpl#0,org.dspace.workflowbasic.BasicWorkflowServiceImpl#0,requestItemServiceFactory,it emExportServiceFactory,itemImportServiceFactory,mediaFilterServiceFactory,sfxServiceFactory,appUtilServiceFactory,authenticateServiceFactory,authorityServiceFactory,contentAuthorityServiceFactory,authorizeServiceFactory,checkerServiceFa ctory,contentServiceFactory,coreServiceFactory,curateServiceFactory,disseminateServiceFactory,embargoServiceFactory,ePersonServiceFactory,eventServiceFactory,handleServiceFactory,harvestServiceFactory,identifierServiceFactory,licenseSer viceFactory,statisticsServiceFactory,storageServiceFactory,versionServiceFactory,workflowServiceFactory,org.springframework.context.annotation.ConfigurationClassPostProcessor.importAwareProcessor]; root of factory hierarchy INFO [localhost-startStop-1] (ImportService.java:49) - Loading 1 import sources. INFO [localhost-startStop-1] (SessionRequestServiceImpl.java:64) - init INFO [localhost-startStop-1] (EhCacheManagerFactoryBean.java:110) - Initializing EhCache CacheManager INFO [localhost-startStop-1] (CachingServiceImpl.java:224) - init() INFO [localhost-startStop-1] (CachingServiceImpl.java:266) - Caching service initialized: ** Memory report freeMemory: 215406192 totalMemory: 538968064 maxMemory: 7471628288 ** Full report of all known caches (0): WARN [localhost-startStop-1] (EmailServiceImpl.java:79) - Couldn't get an email session from environment: Name [mail/Session] is not bound in this Context. Unable to find [mail]. INFO [localhost-startStop-1] (EmailServiceImpl.java:89) - Initializing an email session from configuration. INFO [localhost-startStop-1] (DefaultListableBeanFactory.java:603) - Pre-instantiating singletons in org.springframework.beans.factory.support.DefaultListableBeanFactory@22939fe8: defining beans [org.springframework.context.annotation. internalConfigurationAnnotationProcessor,org.springframework.context.annotation.internalAutowiredAnnotationProcessor,org.springframework.context.annotation.internalRequiredAnnotationProcessor,org.springframework.context.annotation.inter nalCommonAnnotationProcessor,org.springframework.context.annotation.internalPersistenceAnnotationProcessor,org.dspace.servicemanager.spring.DSpaceBeanPostProcessor#0,org.dspace.example.Example,org.dspace.app.sherpa.SHERPAService,org.dsp ace.app.sherpa.submit.SHERPASubmitService,org.dspace.app.sherpa.submit.SHERPASubmitConfigurationService,importService,PubmedImportService,PubmedMetadataFieldMapping,lookupID,org.dspace.discovery.SearchService,org.dspace.app.requestitem. RequestItemAuthorExtractor,org.dspace.identifier.service.IdentifierService,org.dspace.identifier.VersionedHandleIdentifierProvider,org.dspace.core.DBConnection,org.dspace.storage.rdbms.DatabaseRegistryUpdater#0,org.dspace.storage.rdbms. GroupServiceInitializer#0,org.dspace.storage.rdbms.PostgreSQLCryptoChecker#0,org.dspace.storage.rdbms.SiteServiceInitializer#0,org.dspace.core.LoggerServiceImpl#0,propertyPlaceholderConfigurer,dspaceConfigurationFactoryBean,org.dspace.s ervices.CachingService,org.dspace.caching.ehcache.CacheManager,org.dspace.services.SessionService,org.dspace.services.EventService,org.dspace.services.email.EmailServiceImpl,dSpaceServicesFactory,org.dspace.versioning.service.Versioning Service,org.dspace.storage.bitstore.BitstreamStorageService,localStore,s3Store,rdfFactory,org.dspace.rdf.conversion.SimpleDSORelationsConverterPlugin,org.dspace.rdf.conversion.MetadataConverterPlugin,org.dspace.rdf.conversion.StaticDSOC onverterPlugin,org.dspace.rdf.conversion.RDFConverter,org.dspace.rdf.storage.LocalURIGenerator,org.dspace.rdf.storage.HandleURIGenerator,org.dspace.rdf.storage.DOIURIGenerator,org.dspace.rdf.storage.DOIHandleURIGenerator,org.dspace.rdf. storage.RDFStorage,org.dspace.app.requestitem.dao.impl.RequestItemDAOImpl#0,org.dspace.app.util.dao.impl.WebAppDAOImpl#0,org.dspace.authorize.dao.impl.ResourcePolicyDAOImpl#0,org.dspace.checker.dao.impl.ChecksumHistoryDAOImpl#0,org.dspa ce.checker.dao.impl.ChecksumResultDAOImpl#0,org.dspace.checker.dao.impl.MostRecentChecksumDAOImpl#0,org.dspace.content.dao.impl.CollectionDAOImpl#0,org.dspace.content.dao.impl.BitstreamDAOImpl#0,org.dspace.content.dao.impl.BitstreamForm atDAOImpl#0,org.dspace.content.dao.impl.BundleDAOImpl#0,org.dspace.content.dao.impl.CommunityDAOImpl#0,org.dspace.content.dao.impl.ItemDAOImpl#0,org.dspace.content.dao.impl.MetadataFieldDAOImpl#0,org.dspace.content.dao.impl.MetadataSche maDAOImpl#0,org.dspace.content.dao.impl.MetadataValueDAOImpl#0,org.dspace.content.dao.impl.SiteDAOImpl#0,org.dspace.content.dao.impl.WorkspaceItemDAOImpl#0,org.dspace.eperson.dao.impl.EPersonDAOImpl#0,org.dspace.eperson.dao.impl.Group2G roupCacheDAOImpl#0,org.dspace.eperson.dao.impl.GroupDAOImpl#0,org.dspace.eperson.dao.impl.RegistrationDataDAOImpl#0,org.dspace.eperson.dao.impl.SubscriptionDAOImpl#0,org.dspace.handle.dao.impl.HandleDAOImpl#0,org.dspace.harvest.dao.impl .HarvestedItemDAOImpl#0,org.dspace.harvest.dao.impl.HarvestedCollectionDAOImpl#0,org.dspace.identifier.dao.impl.DOIDAOImpl#0,org.dspace.versioning.dao.impl.VersionDAOImpl#0,org.dspace.versioning.dao.impl.VersionHistoryDAOImpl#0,org.dspa ce.workflowbasic.dao.impl.BasicWorkflowItemDAOImpl#0,org.dspace.workflowbasic.dao.impl.TaskListItemDAOImpl#0,org.dspace.xmlworkflow.storedcomponents.dao.impl.ClaimedTaskDAOImpl#0,org.dspace.xmlworkflow.storedcomponents.dao.impl.Collecti onRoleDAOImpl#0,org.dspace.xmlworkflow.storedcomponents.dao.impl.InProgressUserDAOImpl#0,org.dspace.xmlworkflow.storedcomponents.dao.impl.PoolTaskDAOImpl#0,org.dspace.xmlworkflow.storedcomponents.dao.impl.WorkflowItemRoleDAOImpl#0,org.d space.xmlworkflow.storedcomponents.dao.impl.XmlWorkflowItemDAOImpl#0,claimactionAPI,reviewactionAPI,editactionAPI,finaleditactionAPI,singleuserreviewactionAPI,selectrevieweractionAPI,scorereviewactionAPI,evaluationactionAPI,autoassignac tionAPI,noUserSelectionActionAPI,assignoriginalsubmitteractionAPI,reviewaction,editaction,finaleditaction,selectrevieweraction,singleuserreviewaction,scorereviewaction,evaluationaction,claimaction,autoassignAction,noUserSelectionAction, originalSubmitterAssignAction,solrServiceResourceIndexPlugin,SolrServiceSpellIndexingPlugin,solrServiceMetadataBrowseIndexingPlugin,hasContentInOriginalBundle,org.dspace.discovery.configuration.DiscoveryConfigurationService,defaultConfi guration,homepageConfiguration,homepageTagCloudFacetConfiguration,defaultTagCloudFacetConfiguration,tagCloudConfiguration,browseTagCloudConfiguration,searchFilterTitle,searchFilterAuthor,searchFilterSubject,searchFilterIssued,searchFilt erContentInOriginalBundle,sortTitle,sortDateIssued,pubmedMetadataFieldMap,pubmedLanguageContrib,dateContrib,pubmedContrib,titleContrib,abstractContrib,authorContrib,combinedauthorList,lastNameContrib,firstNameContrib,keywordContrib,year Contrib,monthContrib,dayContrib,languageContrib,dc.title,dc.description.abstract,dc.contributor.author,dc.date.issued,dc.language.iso,dc.subject,dc.identifier.other,prefixToNamespaceMapping,maxRetry,pubmedService,org.dspace.app.itemimpo rt.BTEBatchImportService,batchImportTransformationEngine,batchImportLinearWorkflow,org.dspace.submit.lookup.SubmissionLookupService,phase1TransformationEngine,multipleDataLoader,org.dspace.submit.lookup.SubmissionLookupOutputGenerator,p hase1LinearWorkflow,mapConverter_arxivSubject,mapConverter_pubstatusPubmed,removeLastDot,phase2TransformationEngine,submissionItemDataLoader,phase2linearWorkflow,fieldMergeModifier,valueConcatenationModifier,languageCodeModifier,org.dsp ace.submit.lookup.DSpaceWorkspaceItemOutputGenerator,bibTeXDataLoader,csvDataLoader,tsvDataLoader,risDataLoader,endnoteDataLoader,oaipmhDataLoader,pubmedOnlineDataLoader,pubmedFileDataLoader,pubmedInputMap,arXivOnlineDataLoader,arXivFil eDataLoader,arxivInputMap,crossRefOnlineDataLoader,crossRefFileDataLoader,crossrefInputMap,ciniiOnlineDataLoader,ciniiFileDataLoader,ciniiInputMap,outputMap,org.dspace.app.itemmarking.ItemMarkingExtractor.type,org.dspace.app.itemmarking .ItemMarkingExtractor.availability,typeMap,collectionMap,org.dspace.util.MultiFormatDateParser,sessionFactory,dataSource,dspaceDataSource,org.dspace.authority.AuthoritySearchService,dspace.DSpaceAuthorityIndexer,AuthorityTypes,OrcidSour ce,org.dspace.app.requestitem.RequestItemServiceImpl#0,org.dspace.app.itemexport.ItemExportServiceImpl#0,org.dspace.app.itemimport.ItemImportServiceImpl#0,org.dspace.app.mediafilter.MediaFilterServiceImpl#0,org.dspace.app.sfx.SFXFileRea derServiceImpl#0,org.dspace.app.util.MetadataExposureServiceImpl#0,org.dspace.app.util.OpenSearchServiceImpl#0,org.dspace.app.util.WebAppServiceImpl#0,org.dspace.authenticate.AuthenticationServiceImpl#0,org.dspace.authorize.AuthorizeSer viceImpl#0,org.dspace.authorize.ResourcePolicyServiceImpl#0,org.dspace.authority.AuthorityValueServiceImpl#0,org.dspace.authority.AuthorityServiceImpl#0,org.dspace.checker.ChecksumHistoryServiceImpl#0,org.dspace.checker.ChecksumResultSe rviceImpl#0,org.dspace.checker.MostRecentChecksumServiceImpl#0,org.dspace.checker.SimpleReporterServiceImpl#0,org.dspace.content.CollectionServiceImpl#0,org.dspace.content.BitstreamFormatServiceImpl#0,org.dspace.content.BitstreamService Impl#0,org.dspace.content.BundleServiceImpl#0,org.dspace.content.CommunityServiceImpl#0,org.dspace.content.InstallItemServiceImpl#0,org.dspace.content.ItemServiceImpl#0,org.dspace.content.MetadataFieldServiceImpl#0, org.dspace.content.Me <http://org.dspace.content.me/> tadataSchemaServiceImpl#0,org.dspace.content.MetadataValueServiceImpl#0,org.dspace.content.SiteServiceImpl#0,org.dspace.content.SupervisedItemServiceImpl#0,org.dspace.content.WorkspaceItemServiceImpl#0,org.dspace.content.authority.Choic eAuthorityServiceImpl#0,org.dspace.content.authority.MetadataAuthorityServiceImpl#0,org.dspace.core.LegacyPluginServiceImpl#0,org.dspace.core.LicenseServiceImpl#0,org.dspace.core.NewsServiceImpl#0,org.dspace.curate.WorkflowCuratorServic eImpl#0,org.dspace.disseminate.CitationDocumentServiceImpl#0,org.dspace.embargo.EmbargoServiceImpl#0,org.dspace.eperson.AccountServiceImpl#0,org.dspace.eperson.EPersonServiceImpl#0,org.dspace.eperson.GroupServiceImpl#0,org.dspace.eperso n.RegistrationDataServiceImpl#0,org.dspace.eperson.SubscribeServiceImpl#0,org.dspace.eperson.SupervisorServiceImpl#0,org.dspace.event.EventServiceImpl#0,org.dspace.handle.HandleServiceImpl#0,org.dspace.harvest.HarvestedCollectionService Impl#0,org.dspace.harvest.HarvestedItemServiceImpl#0,org.dspace.harvest.HarvestSchedulingServiceImpl#0,org.dspace.identifier.DOIServiceImpl#0,org.dspace.license.CreativeCommonsServiceImpl#0,elasticSearchLoggerService,solrLoggerService,o rg.dspace.versioning.VersionHistoryServiceImpl#0,org.dspace.workflowbasic.TaskListItemServiceImpl#0,org.dspace.workflowbasic.BasicWorkflowItemServiceImpl#0,org.dspace.workflowbasic.BasicWorkflowServiceImpl#0,requestItemServiceFactory,it emExportServiceFactory,itemImportServiceFactory,mediaFilterServiceFactory,sfxServiceFactory,appUtilServiceFactory,authenticateServiceFactory,authorityServiceFactory,contentAuthorityServiceFactory,authorizeServiceFactory,checkerServiceFa ctory,contentServiceFactory,coreServiceFactory,curateServiceFactory,disseminateServiceFactory,embargoServiceFactory,ePersonServiceFactory,eventServiceFactory,handleServiceFactory,harvestServiceFactory,identifierServiceFactory,licenseSer viceFactory,statisticsServiceFactory,storageServiceFactory,versionServiceFactory,workflowServiceFactory,org.springframework.context.annotation.ConfigurationClassPostProcessor.importAwareProcessor]; root of factory hierarchy INFO [localhost-startStop-1] (SpringServiceManager.java:230) - Spring Service Manager started up in 2978 ms with 280 services... INFO [localhost-startStop-1] (LoggerServiceImpl.java:142) - Using dspace provided log configuration (log.init.config) INFO [localhost-startStop-1] (LoggerServiceImpl.java:142) - Loading: /dspace/config/log4j.properties 12-Dec-2016 11:16:04.405 INFO [localhost-startStop-1] org.apache.catalina.startup.HostConfig.deployDirectory Deployment of web application directory /usr/local/apache-tomcat-8.5.9/webapps/swordv2 has finished in 9,319 ms 12-Dec-2016 11:16:04.406 INFO [localhost-startStop-1] org.apache.catalina.startup.HostConfig.deployDirectory Deploying web application directory /usr/local/apache-tomcat-8.5.9/webapps/jspui 12-Dec-2016 11:16:09.449 INFO [localhost-startStop-1] org.apache.jasper.servlet.TldScanner.scanJars At least one JAR was scanned for TLDs yet contained no TLDs. Enable debug logging for this logger for a complete list of JARs that were scanned but no TLDs were found in them. Skipping unneeded JARs during scanning can improve startup time and JSP compilation time. log4j:WARN No appenders could be found for logger (org.dspace.servicemanager.DSpaceKernelInit). log4j:WARN Please initialize the log4j system properly. log4j:WARN See http://logging.apache.org/log4j/1.2/faq.html#noconfig for more info. INFO: Using dspace provided log configuration (log.init.config) INFO: Loading: /dspace/config/log4j.properties -- You received this message because you are subscribed to the Google Groups "DSpace Technical Support" group. To unsubscribe from this group and stop receiving emails from it, send an email to dspace-tech+unsubscr...@googlegroups.com. To post to this group, send email to dspace-tech@googlegroups.com. Visit this group at https://groups.google.com/group/dspace-tech. For more options, visit https://groups.google.com/d/optout.
