I started with 7 and it stopped at the same place in the catalina.out file.
On Wednesday, December 14, 2016 at 10:40:27 AM UTC-6, Hardy Pottinger wrote: > > Hmm... I assume that after that last line of output Tomcat just hangs? You > might try Tomcat 7 instead of Tomcat 8, just to give you a comparison. I do > know people have successfully used Tomcat 8 with Dspace 6, but I myself > have not. > > --Hardy > > On Wed, Dec 14, 2016 at 10:26 AM, Larry Hansard <hans...@gmail.com > <javascript:>> wrote: > > It always stop at the same point: > > 14-Dec-2016 10:23:12.629 INFO [main] > org.apache.catalina.startup.VersionLoggerListener.log Server version: > Apache Tomcat/8.5.9 > 14-Dec-2016 10:23:12.633 INFO [main] > org.apache.catalina.startup.VersionLoggerListener.log Server built: > Dec 5 2016 20:18:12 UTC > 14-Dec-2016 10:23:12.633 INFO [main] > org.apache.catalina.startup.VersionLoggerListener.log Server number: > 8.5.9.0 > 14-Dec-2016 10:23:12.634 INFO [main] > org.apache.catalina.startup.VersionLoggerListener.log OS Name: > Linux > 14-Dec-2016 10:23:12.634 INFO [main] > org.apache.catalina.startup.VersionLoggerListener.log OS Version: > 2.6.32-642.11.1.el6.x86_64 > 14-Dec-2016 10:23:12.634 INFO [main] > org.apache.catalina.startup.VersionLoggerListener.log Architecture: > amd64 > 14-Dec-2016 10:23:12.634 INFO [main] > org.apache.catalina.startup.VersionLoggerListener.log Java Home: > /usr/java/jdk1.8.0/jre > 14-Dec-2016 10:23:12.634 INFO [main] > org.apache.catalina.startup.VersionLoggerListener.log JVM Version: > 1.8.0-b132 > 14-Dec-2016 10:23:12.635 INFO [main] > org.apache.catalina.startup.VersionLoggerListener.log JVM Vendor: > Oracle Corporation > 14-Dec-2016 10:23:12.635 INFO [main] > org.apache.catalina.startup.VersionLoggerListener.log CATALINA_BASE: > /usr/local/apache-tomcat-8.5.9 > 14-Dec-2016 10:23:12.635 INFO [main] > org.apache.catalina.startup.VersionLoggerListener.log CATALINA_HOME: > /usr/local/apache-tomcat-8.5.9 > 14-Dec-2016 10:23:12.636 INFO [main] > org.apache.catalina.startup.VersionLoggerListener.log Command line > argument: > -Djava.util.logging.config.file=/usr/local/apache-tomcat-8.5.9/conf/logging.properties > 14-Dec-2016 10:23:12.636 INFO [main] > org.apache.catalina.startup.VersionLoggerListener.log Command line > argument: -Djava.util.logging.manager=org.apache.juli.ClassLoaderLogManager > 14-Dec-2016 10:23:12.636 INFO [main] > org.apache.catalina.startup.VersionLoggerListener.log Command line > argument: -Djdk.tls.ephemeralDHKeySize=2048 > 14-Dec-2016 10:23:12.637 INFO [main] > org.apache.catalina.startup.VersionLoggerListener.log Command line > argument: -Djava.protocol.handler.pkgs=org.apache.catalina.webresources > 14-Dec-2016 10:23:12.637 INFO [main] > org.apache.catalina.startup.VersionLoggerListener.log Command line > argument: -Dcatalina.base=/usr/local/apache-tomcat-8.5.9 > 14-Dec-2016 10:23:12.638 INFO [main] > org.apache.catalina.startup.VersionLoggerListener.log Command line > argument: -Dcatalina.home=/usr/local/apache-tomcat-8.5.9 > 14-Dec-2016 10:23:12.638 INFO [main] > org.apache.catalina.startup.VersionLoggerListener.log Command line > argument: -Djava.io.tmpdir=/usr/local/apache-tomcat-8.5.9/temp > 14-Dec-2016 10:23:12.638 INFO [main] > org.apache.catalina.core.AprLifecycleListener.lifecycleEvent The APR based > Apache Tomcat Native library which allows optimal performance in production > environments was not found on the java.library.p > ath: /usr/java/packages/lib/amd64:/usr/lib64:/lib64:/lib:/usr/lib > 14-Dec-2016 10:23:13.053 INFO [main] > org.apache.coyote.AbstractProtocol.init Initializing ProtocolHandler > ["http-nio-8080"] > 14-Dec-2016 10:23:13.106 INFO [main] > org.apache.tomcat.util.net.NioSelectorPool.getSharedSelector > Using a shared selector for servlet write/read > 14-Dec-2016 10:23:13.111 INFO [main] > org.apache.coyote.AbstractProtocol.init Initializing ProtocolHandler > ["ajp-nio-8009"] > 14-Dec-2016 10:23:13.115 INFO [main] > org.apache.tomcat.util.net.NioSelectorPool.getSharedSelector > Using a shared selector for servlet write/read > 14-Dec-2016 10:23:13.115 INFO [main] > org.apache.catalina.startup.Catalina.load Initialization processed in 1450 > ms > 14-Dec-2016 10:23:13.178 INFO [main] > org.apache.catalina.core.StandardService.startInternal Starting service > Catalina > 14-Dec-2016 10:23:13.178 INFO [main] > org.apache.catalina.core.StandardEngine.startInternal Starting Servlet > Engine: Apache Tomcat/8.5.9 > 14-Dec-2016 10:23:13.212 INFO [localhost-startStop-1] > org.apache.catalina.startup.HostConfig.deployDirectory Deploying web > application directory /usr/local/apache-tomcat-8.5.9/webapps/swordv2 > 14-Dec-2016 10:23:23.387 INFO [localhost-startStop-1] > org.apache.jasper.servlet.TldScanner.scanJars At least one JAR was scanned > for TLDs yet contained no TLDs. Enable debug logging for this logger for a > complete list of JARs that were > scanned but no TLDs were found in them. Skipping unneeded JARs during > scanning can improve startup time and JSP compilation time. > INFO [localhost-startStop-1] (DSpaceKernelInit.java:53) - Created new > kernel: > DSpaceKernel:org.dspace:name=b2a01689-f7a4-4e80-bd01-05c55055a6c7,type=DSpaceKernel:lastLoad=null:loadTime=0:running=false:kernel=null > INFO [localhost-startStop-1] (DSpaceConfigurationService.java:506) - > Started up configuration service and loaded settings: > ConfigDir=/dspace/config, Size=552 > INFO [localhost-startStop-1] (AbstractApplicationContext.java:515) - > Refreshing > org.springframework.context.support.ClassPathXmlApplicationContext@3a61429e: > startup date [Wed Dec 14 10:23:24 CST 2016]; root of context hierarchy > INFO [localhost-startStop-1] (XmlBeanDefinitionReader.java:316) - Loading > XML bean definitions from class path resource > [spring/spring-dspace-applicationContext.xml] > INFO [localhost-startStop-1] (XmlBeanDefinitionReader.java:316) - Loading > XML bean definitions from file > [/usr/local/apache-tomcat-8.5.9/webapps/swordv2/WEB-INF/classes/spring/spring-dspace-addon-example-services.xml] > INFO [localhost-startStop-1] (XmlBeanDefinitionReader.java:316) - Loading > XML bean definitions from URL > [jar:file:/usr/local/apache-tomcat-8.5.9/webapps/swordv2/WEB-INF/lib/additions-6.0.jar!/spring/spring-dspace-addon-example-services > .xml] > INFO [localhost-startStop-1] (DefaultListableBeanFactory.java:675) - > Overriding bean definition for bean 'org.dspace.example.Example': replacing > [Generic bean: class [org.dspace.example.impl.ExampleImpl]; scope=; > abstract=false; lazyIn > it=false; autowireMode=0; dependencyCheck=0; autowireCandidate=false; > primary=false; factoryBeanName=null; factoryMethodName=null; > initMethodName=null; destroyMethodName=null; defined in file > [/usr/local/apache-tomcat-8.5.9/webapps/swor > dv2/WEB-INF/classes/spring/spring-dspace-addon-example-services.xml]] with > [Generic bean: class [org.dspace.example.impl.ExampleImpl]; scope=; > abstract=false; lazyInit=false; autowireMode=0; dependencyCheck=0; > autowireCandidate=false; p > rimary=false; factoryBeanName=null; factoryMethodName=null; > initMethodName=null; destroyMethodName=null; defined in URL > [jar:file:/usr/local/apache-tomcat-8.5.9/webapps/swordv2/WEB-INF/lib/additions-6.0.jar!/spring/spring-dspace-addon-e > xample-services.xml]] > INFO [localhost-startStop-1] (XmlBeanDefinitionReader.java:316) - Loading > XML bean definitions from URL > [jar:file:/usr/local/apache-tomcat-8.5.9/webapps/swordv2/WEB-INF/lib/dspace-api-6.0.jar!/spring/spring-dspace-addon-sherpa-services > .xml] > INFO [localhost-startStop-1] (XmlBeanDefinitionReader.java:316) - Loading > XML bean definitions from URL > [jar:file:/usr/local/apache-tomcat-8.5.9/webapps/swordv2/WEB-INF/lib/dspace-api-6.0.jar!/spring/spring-dspace-addon-sherpa-configur > ation-services.xml] > INFO [localhost-startStop-1] (XmlBeanDefinitionReader.java:316) - Loading > XML bean definitions from URL > [jar:file:/usr/local/apache-tomcat-8.5.9/webapps/swordv2/WEB-INF/lib/dspace-api-6.0.jar!/spring/spring-dspace-addon-import-services > .xml] > INFO [localhost-startStop-1] (XmlBeanDefinitionReader.java:316) - Loading > XML bean definitions from URL > [jar:file:/usr/local/apache-tomcat-8.5.9/webapps/swordv2/WEB-INF/lib/dspace-api-6.0.jar!/spring/spring-dspace-addon-discovery-servi > ces.xml] > INFO [localhost-startStop-1] (XmlBeanDefinitionReader.java:316) - Loading > XML bean definitions from URL > [jar:file:/usr/local/apache-tomcat-8.5.9/webapps/swordv2/WEB-INF/lib/dspace-api-6.0.jar!/spring/spring-dspace-addon-requestitem-ser > vices.xml] > INFO [localhost-startStop-1] (XmlBeanDefinitionReader.java:316) - Loading > XML bean definitions from URL > [jar:file:/usr/local/apache-tomcat-8.5.9/webapps/swordv2/WEB-INF/lib/dspace-api-6.0.jar!/spring/spring-dspace-core-services.xml] > INFO [localhost-startStop-1] (XmlBeanDefinitionReader.java:316) - Loading > XML bean definitions from URL > [jar:file:/usr/local/apache-tomcat-8.5.9/webapps/swordv2/WEB-INF/lib/dspace-services-6.0.jar!/spring/spring-dspace-core-services.xm > l] > INFO [localhost-startStop-1] (XmlBeanDefinitionReader.java:316) - Loading > XML bean definitions from file > [/dspace/config/spring/api/versioning-service.xml] > INFO [localhost-startStop-1] (XmlBeanDefinitionReader.java:316) - Loading > XML bean definitions from file [/dspace/config/spring/api/bitstore.xml] > INFO [localhost-startStop-1] (XmlBeanDefinitionReader.java:316) - Loading > XML bean definitions from file [/dspace/config/spring/api/rdf.xml] > INFO [localhost-startStop-1] (XmlBeanDefinitionReader.java:316) - Loading > XML bean definitions from file > [/dspace/config/spring/api/core-dao-services.xml] > INFO [localhost-startStop-1] (XmlBeanDefinitionReader.java:316) - Loading > XML bean definitions from file > [/dspace/config/spring/api/workflow-actions.xml] > INFO [localhost-startStop-1] (XmlBeanDefinitionReader.java:316) - Loading > XML bean definitions from file [/dspace/config/spring/api/discovery.xml] > INFO [localhost-startStop-1] (XmlBeanDefinitionReader.java:316) - Loading > XML bean definitions from file > [/dspace/config/spring/api/pubmed-integration.xml] > INFO [localhost-startStop-1] (XmlBeanDefinitionReader.java:316) - Loading > XML bean definitions from file [/dspace/config/spring/api/requestitem.xml] > INFO [localhost-startStop-1] (DefaultListableBeanFactory.java:675) - > Overriding bean definition for bean > 'org.dspace.app.requestitem.RequestItemAuthorExtractor': replacing [Generic > bean: class [org.dspace.app.requestitem.RequestItemMet > adataStrategy]; scope=; abstract=false; lazyInit=false; autowireMode=0; > dependencyCheck=0; autowireCandidate=false; primary=false; > factoryBeanName=null; factoryMethodName=null; initMethodName=null; > destroyMethodName=null; defined in URL > > [jar:file:/usr/local/apache-tomcat-8.5.9/webapps/swordv2/WEB-INF/lib/dspace-api-6.0.jar!/spring/spring-dspace-addon-requestitem-services.xml]] > > with [Generic bean: class > [org.dspace.app.requestitem.RequestItemMetadataStrategy]; scope=; > abstract=false; lazyInit=false; autowireMode=0; dependencyCheck=0; > autowireCandidate=false; primary=false; factoryBeanName=null; > factoryMethodName=null; initMethodName=null; destroyMethodName=null; > defined in file [/dspace/config/spring > /api/requestitem.xml]] > INFO [localhost-startStop-1] (XmlBeanDefinitionReader.java:316) - Loading > XML bean definitions from file [/dspace/config/spring/api/sherpa.xml] > INFO [localhost-startStop-1] (DefaultListableBeanFactory.java:675) - > Overriding bean definition for bean > 'org.dspace.app.sherpa.submit.SHERPASubmitConfigurationService': replacing > [Generic bean: class [org.dspace.app.sherpa.submit.SHER > PASubmitConfigurationService]; scope=; abstract=false; lazyInit=false; > autowireMode=0; dependencyCheck=0; autowireCandidate=true; primary=false; > factoryBeanName=null; factoryMethodName=null; initMethodName=null; > destroyMethodName=null; > defined in URL > [jar:file:/usr/local/apache-tomcat-8.5.9/webapps/swordv2/WEB-INF/lib/dspace-api-6.0.jar!/spring/spring-dspace-addon-sherpa-configuration-services.xml]] > > with [Generic bean: class [org.dspace.app.sherpa.submit.SHERPASubmitC > onfigurationService]; scope=; abstract=false; lazyInit=false; > autowireMode=0; dependencyCheck=0; autowireCandidate=true; primary=false; > factoryBeanName=null; factoryMethodName=null; initMethodName=null; > destroyMethodName=null; defined i > n file [/dspace/config/spring/api/sherpa.xml]] > INFO [localhost-startStop-1] (XmlBeanDefinitionReader.java:316) - Loading > XML bean definitions from file [/dspace/config/spring/api/bte.xml] > INFO [localhost-startStop-1] (XmlBeanDefinitionReader.java:316) - Loading > XML bean definitions from file [/dspace/config/spring/api/item-marking.xml] > INFO [localhost-startStop-1] (XmlBeanDefinitionReader.java:316) - Loading > XML bean definitions from file > [/dspace/config/spring/api/discovery-solr.xml] > INFO [localhost-startStop-1] (XmlBeanDefinitionReader.java:316) - Loading > XML bean definitions from file > [/dspace/config/spring/api/core-hibernate.xml] > INFO [localhost-startStop-1] (XmlBeanDefinitionReader.java:316) - Loading > XML bean definitions from file > [/dspace/config/spring/api/orcid-authority-services.xml] > INFO [localhost-startStop-1] (XmlBeanDefinitionReader.java:316) - Loading > XML bean definitions from file [/dspace/config/spring/api/core-services.xml] > INFO [localhost-startStop-1] (XmlBeanDefinitionReader.java:316) - Loading > XML bean definitions from file > [/dspace/config/spring/api/core-factory-services.xml] > INFO [localhost-startStop-1] (XmlBeanDefinitionReader.java:316) - Loading > XML bean definitions from file > [/dspace/config/spring/api/identifier-service.xml] > INFO [localhost-startStop-1] (DefaultListableBeanFactory.java:675) - > Overriding bean definition for bean > 'org.dspace.identifier.service.IdentifierService': replacing [Generic bean: > class [org.dspace.identifier.IdentifierServiceImpl]; s > cope=singleton; abstract=false; lazyInit=false; autowireMode=2; > dependencyCheck=0; autowireCandidate=true; primary=false; > factoryBeanName=null; factoryMethodName=null; initMethodName=null; > destroyMethodName=null; defined in URL [jar:fil > e:/usr/local/apache-tomcat-8.5.9/webapps/swordv2/WEB-INF/lib/dspace-api-6.0.jar!/spring/spring-dspace-core-services.xml]] > > with [Generic bean: class [org.dspace.identifier.IdentifierServiceImpl]; > scope=singleton; abstract=false; lazyInit > =false; autowireMode=2; dependencyCheck=0; autowireCandidate=true; > primary=false; factoryBeanName=null; factoryMethodName=null; > initMethodName=null; destroyMethodName=null; defined in file > [/dspace/config/spring/api/identifier-service.x > ml]] > INFO [localhost-startStop-1] > (AutowiredAnnotationBeanPostProcessor.java:141) - JSR-330 > 'javax.inject.Inject' annotation found and supported for autowiring > INFO [localhost-startStop-1] (AbstractApplicationContext.java:1380) - > Bean 'dspaceDataSource' of type [class > org.apache.commons.dbcp2.BasicDataSource] is not eligible for getting > processed by all BeanPostProcessors (for example: not el > igible for auto-proxying) > INFO [localhost-startStop-1] (JndiObjectFactoryBean.java:244) - JNDI > lookup failed - returning specified default object instead: > javax.naming.NameNotFoundException: Name [jdbc/dspace] is not bound in this > Context. Unable to find [jdbc] > . > INFO [localhost-startStop-1] (AbstractApplicationContext.java:1380) - > Bean 'dataSource' of type [class > org.springframework.jndi.JndiObjectFactoryBean] is not eligible for getting > processed by all BeanPostProcessors (for example: not el > igible for auto-proxying) > INFO [localhost-startStop-1] (DefaultListableBeanFactory.java:603) - > Pre-instantiating singletons in > org.springframework.beans.factory.support.DefaultListableBeanFactory@24c694f4: > > defining beans [org.springframework.context.annotation. > > internalConfigurationAnnotationProcessor,org.springframework.context.annotation.internalAutowiredAnnotationProcessor,org.springframework.context.annotation.internalRequiredAnnotationProcessor,org.springframework.context.annotation.inter > > nalCommonAnnotationProcessor,org.springframework.context.annotation.internalPersistenceAnnotationProcessor,org.dspace.servicemanager.spring.DSpaceBeanPostProcessor#0,org.dspace.example.Example,org.dspace.app.sherpa.SHERPAService,org.dsp > > ace.app.sherpa.submit.SHERPASubmitService,org.dspace.app.sherpa.submit.SHERPASubmitConfigurationService,importService,PubmedImportService,PubmedMetadataFieldMapping,lookupID,org.dspace.discovery.SearchService,org.dspace.app.requestitem. > > RequestItemAuthorExtractor,org.dspace.identifier.service.IdentifierService,org.dspace.identifier.VersionedHandleIdentifierProvider,org.dspace.core.DBConnection,org.dspace.storage.rdbms.DatabaseRegistryUpdater#0,org.dspace.storage.rdbms. > > GroupServiceInitializer#0,org.dspace.storage.rdbms.PostgreSQLCryptoChecker#0,org.dspace.storage.rdbms.SiteServiceInitializer#0,org.dspace.core.LoggerServiceImpl#0,propertyPlaceholderConfigurer,dspaceConfigurationFactoryBean,org.dspace.s > > ervices.CachingService,org.dspace.caching.ehcache.CacheManager,org.dspace.services.SessionService,org.dspace.services.EventService,org.dspace.services.email.EmailServiceImpl,dSpaceServicesFactory,org.dspace.versioning.service.Versioning > > Service,org.dspace.storage.bitstore.BitstreamStorageService,localStore,s3Store,rdfFactory,org.dspace.rdf.conversion.SimpleDSORelationsConverterPlugin,org.dspace.rdf.conversion.MetadataConverterPlugin,org.dspace.rdf.conversion.StaticDSOC > > onverterPlugin,org.dspace.rdf.conversion.RDFConverter,org.dspace.rdf.storage.LocalURIGenerator,org.dspace.rdf.storage.HandleURIGenerator,org.dspace.rdf.storage.DOIURIGenerator,org.dspace.rdf.storage.DOIHandleURIGenerator,org.dspace.rdf. > > storage.RDFStorage,org.dspace.app.requestitem.dao.impl.RequestItemDAOImpl#0,org.dspace.app.util.dao.impl.WebAppDAOImpl#0,org.dspace.authorize.dao.impl.ResourcePolicyDAOImpl#0,org.dspace.checker.dao.impl.ChecksumHistoryDAOImpl#0,org.dspa > > ce.checker.dao.impl.ChecksumResultDAOImpl#0,org.dspace.checker.dao.impl.MostRecentChecksumDAOImpl#0,org.dspace.content.dao.impl.CollectionDAOImpl#0,org.dspace.content.dao.impl.BitstreamDAOImpl#0,org.dspace.content.dao.impl.BitstreamForm > > atDAOImpl#0,org.dspace.content.dao.impl.BundleDAOImpl#0,org.dspace.content.dao.impl.CommunityDAOImpl#0,org.dspace.content.dao.impl.ItemDAOImpl#0,org.dspace.content.dao.impl.MetadataFieldDAOImpl#0,org.dspace.content.dao.impl.MetadataSche > > maDAOImpl#0,org.dspace.content.dao.impl.MetadataValueDAOImpl#0,org.dspace.content.dao.impl.SiteDAOImpl#0,org.dspace.content.dao.impl.WorkspaceItemDAOImpl#0,org.dspace.eperson.dao.impl.EPersonDAOImpl#0,org.dspace.eperson.dao.impl.Group2G > > roupCacheDAOImpl#0,org.dspace.eperson.dao.impl.GroupDAOImpl#0,org.dspace.eperson.dao.impl.RegistrationDataDAOImpl#0,org.dspace.eperson.dao.impl.SubscriptionDAOImpl#0,org.dspace.handle.dao.impl.HandleDAOImpl#0,org.dspace.harvest.dao.impl > > .HarvestedItemDAOImpl#0,org.dspace.harvest.dao.impl.HarvestedCollectionDAOImpl#0,org.dspace.identifier.dao.impl.DOIDAOImpl#0,org.dspace.versioning.dao.impl.VersionDAOImpl#0,org.dspace.versioning.dao.impl.VersionHistoryDAOImpl#0,org.dspa > > ce.workflowbasic.dao.impl.BasicWorkflowItemDAOImpl#0,org.dspace.workflowbasic.dao.impl.TaskListItemDAOImpl#0,org.dspace.xmlworkflow.storedcomponents.dao.impl.ClaimedTaskDAOImpl#0,org.dspace.xmlworkflow.storedcomponents.dao.impl.Collecti > > onRoleDAOImpl#0,org.dspace.xmlworkflow.storedcomponents.dao.impl.InProgressUserDAOImpl#0,org.dspace.xmlworkflow.storedcomponents.dao.impl.PoolTaskDAOImpl#0,org.dspace.xmlworkflow.storedcomponents.dao.impl.WorkflowItemRoleDAOImpl#0,org.d > > space.xmlworkflow.storedcomponents.dao.impl.XmlWorkflowItemDAOImpl#0,claimactionAPI,reviewactionAPI,editactionAPI,finaleditactionAPI,singleuserreviewactionAPI,selectrevieweractionAPI,scorereviewactionAPI,evaluationactionAPI,autoassignac > > tionAPI,noUserSelectionActionAPI,assignoriginalsubmitteractionAPI,reviewaction,editaction,finaleditaction,selectrevieweraction,singleuserreviewaction,scorereviewaction,evaluationaction,claimaction,autoassignAction,noUserSelectionAction, > > originalSubmitterAssignAction,solrServiceResourceIndexPlugin,SolrServiceSpellIndexingPlugin,solrServiceMetadataBrowseIndexingPlugin,hasContentInOriginalBundle,org.dspace.discovery.configuration.DiscoveryConfigurationService,defaultConfi > > guration,homepageConfiguration,homepageTagCloudFacetConfiguration,defaultTagCloudFacetConfiguration,tagCloudConfiguration,browseTagCloudConfiguration,searchFilterTitle,searchFilterAuthor,searchFilterSubject,searchFilterIssued,searchFilt > > erContentInOriginalBundle,sortTitle,sortDateIssued,pubmedMetadataFieldMap,pubmedLanguageContrib,dateContrib,pubmedContrib,titleContrib,abstractContrib,authorContrib,combinedauthorList,lastNameContrib,firstNameContrib,keywordContrib,year > > Contrib,monthContrib,dayContrib,languageContrib,dc.title,dc.description.abstract,dc.contributor.author,dc.date.issued,dc.language.iso,dc.subject,dc.identifier.other,prefixToNamespaceMapping,maxRetry,pubmedService,org.dspace.app.itemimpo > > rt.BTEBatchImportService,batchImportTransformationEngine,batchImportLinearWorkflow,org.dspace.submit.lookup.SubmissionLookupService,phase1TransformationEngine,multipleDataLoader,org.dspace.submit.lookup.SubmissionLookupOutputGenerator,p > > hase1LinearWorkflow,mapConverter_arxivSubject,mapConverter_pubstatusPubmed,removeLastDot,phase2TransformationEngine,submissionItemDataLoader,phase2linearWorkflow,fieldMergeModifier,valueConcatenationModifier,languageCodeModifier,org.dsp > > ace.submit.lookup.DSpaceWorkspaceItemOutputGenerator,bibTeXDataLoader,csvDataLoader,tsvDataLoader,risDataLoader,endnoteDataLoader,oaipmhDataLoader,pubmedOnlineDataLoader,pubmedFileDataLoader,pubmedInputMap,arXivOnlineDataLoader,arXivFil > > eDataLoader,arxivInputMap,crossRefOnlineDataLoader,crossRefFileDataLoader,crossrefInputMap,ciniiOnlineDataLoader,ciniiFileDataLoader,ciniiInputMap,outputMap,org.dspace.app.itemmarking.ItemMarkingExtractor.type,org.dspace.app.itemmarking > > .ItemMarkingExtractor.availability,typeMap,collectionMap,org.dspace.util.MultiFormatDateParser,sessionFactory,dataSource,dspaceDataSource,org.dspace.authority.AuthoritySearchService,dspace.DSpaceAuthorityIndexer,AuthorityTypes,OrcidSour > > ce,org.dspace.app.requestitem.RequestItemServiceImpl#0,org.dspace.app.itemexport.ItemExportServiceImpl#0,org.dspace.app.itemimport.ItemImportServiceImpl#0,org.dspace.app.mediafilter.MediaFilterServiceImpl#0,org.dspace.app.sfx.SFXFileRea > > derServiceImpl#0,org.dspace.app.util.MetadataExposureServiceImpl#0,org.dspace.app.util.OpenSearchServiceImpl#0,org.dspace.app.util.WebAppServiceImpl#0,org.dspace.authenticate.AuthenticationServiceImpl#0,org.dspace.authorize.AuthorizeSer > > viceImpl#0,org.dspace.authorize.ResourcePolicyServiceImpl#0,org.dspace.authority.AuthorityValueServiceImpl#0,org.dspace.authority.AuthorityServiceImpl#0,org.dspace.checker.ChecksumHistoryServiceImpl#0,org.dspace.checker.ChecksumResultSe > > rviceImpl#0,org.dspace.checker.MostRecentChecksumServiceImpl#0,org.dspace.checker.SimpleReporterServiceImpl#0,org.dspace.content.CollectionServiceImpl#0,org.dspace.content.BitstreamFormatServiceImpl#0,org.dspace.content.BitstreamService > > Impl#0,org.dspace.content.BundleServiceImpl#0,org.dspace.content.CommunityServiceImpl#0,org.dspace.content.InstallItemServiceImpl#0,org.dspace.content.ItemServiceImpl#0,org.dspace.content.MetadataFieldServiceImpl#0, > org.dspace.content.Me > > tadataSchemaServiceImpl#0,org.dspace.content.MetadataValueServiceImpl#0,org.dspace.content.SiteServiceImpl#0,org.dspace.content.SupervisedItemServiceImpl#0,org.dspace.content.WorkspaceItemServiceImpl#0,org.dspace.content.authority.Choic > > eAuthorityServiceImpl#0,org.dspace.content.authority.MetadataAuthorityServiceImpl#0,org.dspace.core.LegacyPluginServiceImpl#0,org.dspace.core.LicenseServiceImpl#0,org.dspace.core.NewsServiceImpl#0,org.dspace.curate.WorkflowCuratorServic > > eImpl#0,org.dspace.disseminate.CitationDocumentServiceImpl#0,org.dspace.embargo.EmbargoServiceImpl#0,org.dspace.eperson.AccountServiceImpl#0,org.dspace.eperson.EPersonServiceImpl#0,org.dspace.eperson.GroupServiceImpl#0,org.dspace.eperso > > n.RegistrationDataServiceImpl#0,org.dspace.eperson.SubscribeServiceImpl#0,org.dspace.eperson.SupervisorServiceImpl#0,org.dspace.event.EventServiceImpl#0,org.dspace.handle.HandleServiceImpl#0,org.dspace.harvest.HarvestedCollectionService > > Impl#0,org.dspace.harvest.HarvestedItemServiceImpl#0,org.dspace.harvest.HarvestSchedulingServiceImpl#0,org.dspace.identifier.DOIServiceImpl#0,org.dspace.license.CreativeCommonsServiceImpl#0,elasticSearchLoggerService,solrLoggerService,o > > rg.dspace.versioning.VersionHistoryServiceImpl#0,org.dspace.workflowbasic.TaskListItemServiceImpl#0,org.dspace.workflowbasic.BasicWorkflowItemServiceImpl#0,org.dspace.workflowbasic.BasicWorkflowServiceImpl#0,requestItemServiceFactory,it > > emExportServiceFactory,itemImportServiceFactory,mediaFilterServiceFactory,sfxServiceFactory,appUtilServiceFactory,authenticateServiceFactory,authorityServiceFactory,contentAuthorityServiceFactory,authorizeServiceFactory,checkerServiceFa > > ctory,contentServiceFactory,coreServiceFactory,curateServiceFactory,disseminateServiceFactory,embargoServiceFactory,ePersonServiceFactory,eventServiceFactory,handleServiceFactory,harvestServiceFactory,identifierServiceFactory,licenseSer > viceFactory,statisticsServiceFactory,storageServiceFactory,versionServiceFactory,workflowServiceFactory,org.springframework.context.annotation.ConfigurationClassPostProcessor.importAwareProcessor]; > > root of factory hierarchy > INFO [localhost-startStop-1] (ImportService.java:49) - Loading 1 import > sources. > INFO [localhost-startStop-1] (SessionRequestServiceImpl.java:64) - init > INFO [localhost-startStop-1] (EhCacheManagerFactoryBean.java:110) - > Initializing EhCache CacheManager > INFO [localhost-startStop-1] (CachingServiceImpl.java:224) - init() > INFO [localhost-startStop-1] (CachingServiceImpl.java:266) - Caching > service initialized: > ** Memory report > freeMemory: 241684120 > totalMemory: 547356672 > maxMemory: 7471628288 > > ** Full report of all known caches (0): > > WARN [localhost-startStop-1] (EmailServiceImpl.java:79) - Couldn't get an > email session from environment: Name [mail/Session] is not bound in this > Context. Unable to find [mail]. > INFO [localhost-startStop-1] (EmailServiceImpl.java:89) - Initializing an > email session from configuration. > INFO [localhost-startStop-1] (DefaultListableBeanFactory.java:603) - > Pre-instantiating singletons in > org.springframework.beans.factory.support.DefaultListableBeanFactory@24c694f4: > > defining beans [org.springframework.context.annotation. > > internalConfigurationAnnotationProcessor,org.springframework.context.annotation.internalAutowiredAnnotationProcessor,org.springframework.context.annotation.internalRequiredAnnotationProcessor,org.springframework.context.annotation.inter > > nalCommonAnnotationProcessor,org.springframework.context.annotation.internalPersistenceAnnotationProcessor,org.dspace.servicemanager.spring.DSpaceBeanPostProcessor#0,org.dspace.example.Example,org.dspace.app.sherpa.SHERPAService,org.dsp > > ace.app.sherpa.submit.SHERPASubmitService,org.dspace.app.sherpa.submit.SHERPASubmitConfigurationService,importService,PubmedImportService,PubmedMetadataFieldMapping,lookupID,org.dspace.discovery.SearchService,org.dspace.app.requestitem. > > RequestItemAuthorExtractor,org.dspace.identifier.service.IdentifierService,org.dspace.identifier.VersionedHandleIdentifierProvider,org.dspace.core.DBConnection,org.dspace.storage.rdbms.DatabaseRegistryUpdater#0,org.dspace.storage.rdbms. > > GroupServiceInitializer#0,org.dspace.storage.rdbms.PostgreSQLCryptoChecker#0,org.dspace.storage.rdbms.SiteServiceInitializer#0,org.dspace.core.LoggerServiceImpl#0,propertyPlaceholderConfigurer,dspaceConfigurationFactoryBean,org.dspace.s > > ervices.CachingService,org.dspace.caching.ehcache.CacheManager,org.dspace.services.SessionService,org.dspace.services.EventService,org.dspace.services.email.EmailServiceImpl,dSpaceServicesFactory,org.dspace.versioning.service.Versioning > > Service,org.dspace.storage.bitstore.BitstreamStorageService,localStore,s3Store,rdfFactory,org.dspace.rdf.conversion.SimpleDSORelationsConverterPlugin,org.dspace.rdf.conversion.MetadataConverterPlugin,org.dspace.rdf.conversion.StaticDSOC > > onverterPlugin,org.dspace.rdf.conversion.RDFConverter,org.dspace.rdf.storage.LocalURIGenerator,org.dspace.rdf.storage.HandleURIGenerator,org.dspace.rdf.storage.DOIURIGenerator,org.dspace.rdf.storage.DOIHandleURIGenerator,org.dspace.rdf. > > storage.RDFStorage,org.dspace.app.requestitem.dao.impl.RequestItemDAOImpl#0,org.dspace.app.util.dao.impl.WebAppDAOImpl#0,org.dspace.authorize.dao.impl.ResourcePolicyDAOImpl#0,org.dspace.checker.dao.impl.ChecksumHistoryDAOImpl#0,org.dspa > > ce.checker.dao.impl.ChecksumResultDAOImpl#0,org.dspace.checker.dao.impl.MostRecentChecksumDAOImpl#0,org.dspace.content.dao.impl.CollectionDAOImpl#0,org.dspace.content.dao.impl.BitstreamDAOImpl#0,org.dspace.content.dao.impl.BitstreamForm > > atDAOImpl#0,org.dspace.content.dao.impl.BundleDAOImpl#0,org.dspace.content.dao.impl.CommunityDAOImpl#0,org.dspace.content.dao.impl.ItemDAOImpl#0,org.dspace.content.dao.impl.MetadataFieldDAOImpl#0,org.dspace.content.dao.impl.MetadataSche > > maDAOImpl#0,org.dspace.content.dao.impl.MetadataValueDAOImpl#0,org.dspace.content.dao.impl.SiteDAOImpl#0,org.dspace.content.dao.impl.WorkspaceItemDAOImpl#0,org.dspace.eperson.dao.impl.EPersonDAOImpl#0,org.dspace.eperson.dao.impl.Group2G > > roupCacheDAOImpl#0,org.dspace.eperson.dao.impl.GroupDAOImpl#0,org.dspace.eperson.dao.impl.RegistrationDataDAOImpl#0,org.dspace.eperson.dao.impl.SubscriptionDAOImpl#0,org.dspace.handle.dao.impl.HandleDAOImpl#0,org.dspace.harvest.dao.impl > > .HarvestedItemDAOImpl#0,org.dspace.harvest.dao.impl.HarvestedCollectionDAOImpl#0,org.dspace.identifier.dao.impl.DOIDAOImpl#0,org.dspace.versioning.dao.impl.VersionDAOImpl#0,org.dspace.versioning.dao.impl.VersionHistoryDAOImpl#0,org.dspa > > ce.workflowbasic.dao.impl.BasicWorkflowItemDAOImpl#0,org.dspace.workflowbasic.dao.impl.TaskListItemDAOImpl#0,org.dspace.xmlworkflow.storedcomponents.dao.impl.ClaimedTaskDAOImpl#0,org.dspace.xmlworkflow.storedcomponents.dao.impl.Collecti > > onRoleDAOImpl#0,org.dspace.xmlworkflow.storedcomponents.dao.impl.InProgressUserDAOImpl#0,org.dspace.xmlworkflow.storedcomponents.dao.impl.PoolTaskDAOImpl#0,org.dspace.xmlworkflow.storedcomponents.dao.impl.WorkflowItemRoleDAOImpl#0,org.d > > space.xmlworkflow.storedcomponents.dao.impl.XmlWorkflowItemDAOImpl#0,claimactionAPI,reviewactionAPI,editactionAPI,finaleditactionAPI,singleuserreviewactionAPI,selectrevieweractionAPI,scorereviewactionAPI,evaluationactionAPI,autoassignac > > tionAPI,noUserSelectionActionAPI,assignoriginalsubmitteractionAPI,reviewaction,editaction,finaleditaction,selectrevieweraction,singleuserreviewaction,scorereviewaction,evaluationaction,claimaction,autoassignAction,noUserSelectionAction, > > originalSubmitterAssignAction,solrServiceResourceIndexPlugin,SolrServiceSpellIndexingPlugin,solrServiceMetadataBrowseIndexingPlugin,hasContentInOriginalBundle,org.dspace.discovery.configuration.DiscoveryConfigurationService,defaultConfi > > guration,homepageConfiguration,homepageTagCloudFacetConfiguration,defaultTagCloudFacetConfiguration,tagCloudConfiguration,browseTagCloudConfiguration,searchFilterTitle,searchFilterAuthor,searchFilterSubject,searchFilterIssued,searchFilt > > erContentInOriginalBundle,sortTitle,sortDateIssued,pubmedMetadataFieldMap,pubmedLanguageContrib,dateContrib,pubmedContrib,titleContrib,abstractContrib,authorContrib,combinedauthorList,lastNameContrib,firstNameContrib,keywordContrib,year > > Contrib,monthContrib,dayContrib,languageContrib,dc.title,dc.description.abstract,dc.contributor.author,dc.date.issued,dc.language.iso,dc.subject,dc.identifier.other,prefixToNamespaceMapping,maxRetry,pubmedService,org.dspace.app.itemimpo > > rt.BTEBatchImportService,batchImportTransformationEngine,batchImportLinearWorkflow,org.dspace.submit.lookup.SubmissionLookupService,phase1TransformationEngine,multipleDataLoader,org.dspace.submit.lookup.SubmissionLookupOutputGenerator,p > > hase1LinearWorkflow,mapConverter_arxivSubject,mapConverter_pubstatusPubmed,removeLastDot,phase2TransformationEngine,submissionItemDataLoader,phase2linearWorkflow,fieldMergeModifier,valueConcatenationModifier,languageCodeModifier,org.dsp > > ace.submit.lookup.DSpaceWorkspaceItemOutputGenerator,bibTeXDataLoader,csvDataLoader,tsvDataLoader,risDataLoader,endnoteDataLoader,oaipmhDataLoader,pubmedOnlineDataLoader,pubmedFileDataLoader,pubmedInputMap,arXivOnlineDataLoader,arXivFil > > eDataLoader,arxivInputMap,crossRefOnlineDataLoader,crossRefFileDataLoader,crossrefInputMap,ciniiOnlineDataLoader,ciniiFileDataLoader,ciniiInputMap,outputMap,org.dspace.app.itemmarking.ItemMarkingExtractor.type,org.dspace.app.itemmarking > > .ItemMarkingExtractor.availability,typeMap,collectionMap,org.dspace.util.MultiFormatDateParser,sessionFactory,dataSource,dspaceDataSource,org.dspace.authority.AuthoritySearchService,dspace.DSpaceAuthorityIndexer,AuthorityTypes,OrcidSour > > ce,org.dspace.app.requestitem.RequestItemServiceImpl#0,org.dspace.app.itemexport.ItemExportServiceImpl#0,org.dspace.app.itemimport.ItemImportServiceImpl#0,org.dspace.app.mediafilter.MediaFilterServiceImpl#0,org.dspace.app.sfx.SFXFileRea > > derServiceImpl#0,org.dspace.app.util.MetadataExposureServiceImpl#0,org.dspace.app.util.OpenSearchServiceImpl#0,org.dspace.app.util.WebAppServiceImpl#0,org.dspace.authenticate.AuthenticationServiceImpl#0,org.dspace.authorize.AuthorizeSer > > viceImpl#0,org.dspace.authorize.ResourcePolicyServiceImpl#0,org.dspace.authority.AuthorityValueServiceImpl#0,org.dspace.authority.AuthorityServiceImpl#0,org.dspace.checker.ChecksumHistoryServiceImpl#0,org.dspace.checker.ChecksumResultSe > > rviceImpl#0,org.dspace.checker.MostRecentChecksumServiceImpl#0,org.dspace.checker.SimpleReporterServiceImpl#0,org.dspace.content.CollectionServiceImpl#0,org.dspace.content.BitstreamFormatServiceImpl#0,org.dspace.content.BitstreamService > > Impl#0,org.dspace.content.BundleServiceImpl#0,org.dspace.content.CommunityServiceImpl#0,org.dspace.content.InstallItemServiceImpl#0,org.dspace.content.ItemServiceImpl#0,org.dspace.content.MetadataFieldServiceImpl#0, > org.dspace.content.Me > > tadataSchemaServiceImpl#0,org.dspace.content.MetadataValueServiceImpl#0,org.dspace.content.SiteServiceImpl#0,org.dspace.content.SupervisedItemServiceImpl#0,org.dspace.content.WorkspaceItemServiceImpl#0,org.dspace.content.authority.Choic > > eAuthorityServiceImpl#0,org.dspace.content.authority.MetadataAuthorityServiceImpl#0,org.dspace.core.LegacyPluginServiceImpl#0,org.dspace.core.LicenseServiceImpl#0,org.dspace.core.NewsServiceImpl#0,org.dspace.curate.WorkflowCuratorServic > > eImpl#0,org.dspace.disseminate.CitationDocumentServiceImpl#0,org.dspace.embargo.EmbargoServiceImpl#0,org.dspace.eperson.AccountServiceImpl#0,org.dspace.eperson.EPersonServiceImpl#0,org.dspace.eperson.GroupServiceImpl#0,org.dspace.eperso > > n.RegistrationDataServiceImpl#0,org.dspace.eperson.SubscribeServiceImpl#0,org.dspace.eperson.SupervisorServiceImpl#0,org.dspace.event.EventServiceImpl#0,org.dspace.handle.HandleServiceImpl#0,org.dspace.harvest.HarvestedCollectionService > > Impl#0,org.dspace.harvest.HarvestedItemServiceImpl#0,org.dspace.harvest.HarvestSchedulingServiceImpl#0,org.dspace.identifier.DOIServiceImpl#0,org.dspace.license.CreativeCommonsServiceImpl#0,elasticSearchLoggerService,solrLoggerService,o > > rg.dspace.versioning.VersionHistoryServiceImpl#0,org.dspace.workflowbasic.TaskListItemServiceImpl#0,org.dspace.workflowbasic.BasicWorkflowItemServiceImpl#0,org.dspace.workflowbasic.BasicWorkflowServiceImpl#0,requestItemServiceFactory,it > > emExportServiceFactory,itemImportServiceFactory,mediaFilterServiceFactory,sfxServiceFactory,appUtilServiceFactory,authenticateServiceFactory,authorityServiceFactory,contentAuthorityServiceFactory,authorizeServiceFactory,checkerServiceFa > > ctory,contentServiceFactory,coreServiceFactory,curateServiceFactory,disseminateServiceFactory,embargoServiceFactory,ePersonServiceFactory,eventServiceFactory,handleServiceFactory,harvestServiceFactory,identifierServiceFactory,licenseSer > viceFactory,statisticsServiceFactory,storageServiceFactory,versionServiceFactory,workflowServiceFactory,org.springframework.context.annotation.ConfigurationClassPostProcessor.importAwareProcessor]; > > root of factory hierarchy > INFO [localhost-startStop-1] (SpringServiceManager.java:230) - Spring > Service Manager started up in 3755 ms with 280 services... > INFO [localhost-startStop-1] (LoggerServiceImpl.java:142) - Using dspace > provided log configuration (log.init.config) > INFO [localhost-startStop-1] (LoggerServiceImpl.java:142) - Loading: > /dspace/config/log4j.properties > 14-Dec-2016 10:23:27.701 INFO [localhost-startStop-1] > org.apache.catalina.startup.HostConfig.deployDirectory Deployment of web > application directory /usr/local/apache-tomcat-8.5.9/webapps/swordv2 has > finished in 14,489 ms > 14-Dec-2016 10:23:27.701 INFO [localhost-startStop-1] > org.apache.catalina.startup.HostConfig.deployDirectory Deploying web > application directory /usr/local/apache-tomcat-8.5.9/webapps/jspui > 14-Dec-2016 10:23:37.033 INFO [localhost-startStop-1] > org.apache.jasper.servlet.TldScanner.scanJars At least one JAR was scanned > for TLDs yet contained no TLDs. Enable debug logging for this logger for a > complete list of JARs that were > scanned but no TLDs were found in them. Skipping unneeded JARs during > scanning can improve startup time and JSP compilation time. > log4j:WARN No appenders could be found for logger > (org.dspace.servicemanager.DSpaceKernelInit). > log4j:WARN Please initialize the log4j system properly. > log4j:WARN See http://logging.apache.org/log4j/1.2/faq.html#noconfig for > more info. > INFO: Using dspace provided log configuration (log.init.config) > INFO: Loading: /dspace/config/log4j.properties > > On Wed, Dec 14, 2016 at 10:20 AM, Hardy Pottinger <hardy.p...@gmail.com > <javascript:>> wrote: > > Hi, Larry... can you share with us the contents of > $CATALINA_HOME/logs/catalina.out? It will be helpful to see *why* Tomcat > isn't starting. Sometimes is as simple as a permissions/file ownership > issue. The catalina.out log file will help you. > > --Hardy > > On Wed, Dec 14, 2016 at 10:13 AM, Larry Hansard <larrydea...@gmail.com > <javascript:>> wrote: > > I'm still having issues with the 6.0 upgrade. Tomcat will not start. The > database looks like it upgraded okay. Will it work if I do a fresh_install > instead of an upgrade then reload the postgres database from a current > backup? > > Do I use "pg_dump dspace >filename"? > > Here is the database info: > > [dspace@digrepository ~]$ /dspace/bin/dspace database info > > Database Type: postgres > Database URL: jdbc:postgresql://localhost:5432/dspace > Database Schema: public > Database Username: dspace > Database Software: PostgreSQL version 9.4.10 > Database Driver: PostgreSQL Native Driver version PostgreSQL 9.4.1211 > PostgreSQL 'pgcrypto' extension installed/up-to-date? true (version=1.1) > > > +----------------+--------------------------------------------------+---------------------+---------+ > | Version | Description | > Installed on | State | > > +----------------+--------------------------------------------------+---------------------+---------+ > | 1.1 | Initial DSpace 1.1 database schema | > | <Baseln | > | 1.2 | Upgrade to DSpace 1.2 schema | > | <Baseln | > | 1.3 | Upgrade to DSpace 1.3 schema | > | <Baseln | > | 1.3.9 | Drop constraint for DSpace 1 4 schema | > | <Baseln | > | 1.4 | Upgrade to DSpace 1.4 schema | > | <Baseln | > | 1.5 | Upgrade to DSpace 1.5 schema | > | <Baseln | > | 1.5.9 | Drop constraint for DSpace 1 6 schema | > | <Baseln | > | 1.6 | Upgrade to DSpace 1.6 schema | > | <Baseln | > | 1.7 | Upgrade to DSpace 1.7 schema | > | <Baseln | > | 1.8 | Upgrade to DSpace 1.8 schema | > > > ... -- You received this message because you are subscribed to the Google Groups "DSpace Technical Support" group. 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