I believe that I have not seen a filesystem permissions problem
reported this way, but the traceback suggests that Tomcat was reading
DSpace's WEB-INF/web.xml at the time, so it might be well to check the
ownership and permissions of the webapp.'s files.  If it's not that
then I fear that this problem is beyond my current understanding of the
java.security package, but others may be able to help.

Tomcat needs read access to the webapp files, naturally.  It appears
that there are some places in Tomcat where the programmer was careless
and requested write access even when writing makes no sense, so "rw"
access may be required.  Unless you have unusual needs, the files are
most simply set to be owned by the same account used to run Tomcat.  I
looked at one of my own DSpace installations and found:

  -rw-r--r-- 1 tomcat tomcat 20122 2008-01-22 10:02 web.xml

where "tomcat" is the account used to run Tomcat, set up by the
distribution's package manager.  The DSpace documentation may require
some interpretation here, since it assumes that Tomcat is installed
manually and run from an account named 'dspace', but if you use your
distribution's Tomcat package then the account is almost certainly not
named 'dspace'.

-- 
Mark H. Wood, Lead System Programmer   mw...@iupui.edu
Friends don't let friends publish revisable-form documents.

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