Revisiting this : I don't see this behaviour with Inkscape or with GIMP.

I still see this with Eclipse 4.3

The behaviour almost looks like the menu is being drawn behind the
application window, but that could just be a product of the code flow
mentioned above.

See attached image : the top of the menu visible in the menu bar area
has been drawn, along with some of the menu spilling into the
application window, but this seems to have stopped short of rendering
the whole menu. This is the product of clicking the menu item.

** Attachment added: "Screenshot of menu rendering with broken menu"
   
https://bugs.launchpad.net/ubuntu/+source/unity-gtk-module/+bug/1208019/+attachment/3972395/+files/eclipse-broken-menu.png

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https://bugs.launchpad.net/bugs/1208019

Title:
  Eclipse menus doesn't show up in Saucy

Status in Unity GTK+ module:
  Confirmed
Status in “unity-gtk-module” package in Ubuntu:
  Triaged

Bug description:
  ****************
  HOW TO REPRODUCE
  ****************

  1. Run Eclipse, Gimp or Inkscape.
  2. Move the cursor to the top of the screen.
  3. Click on any of the menu items (File, Edit, Navigate, ...)

  ******************
  EXPECTED BEHAVIOUR
  ******************

  - The content of the submenus show up.

  **************
  REAL BEHAVIOUR
  **************

  - Only the top-level headers are available.
  - Nothing happens when clicking on them
  - They don't show up in the HUD either.

  ***********
  WORK-AROUND
  ***********

  To modify "/usr/share/applications/eclipse.desktop" to look like this:

  [Desktop Entry]
  Type=Application
  Name=Eclipse
  Comment=Eclipse Integrated Development Environment
  Icon=eclipse
  Exec=env UBUNTU_MENUPROXY= eclipse
  Terminal=false
  Categories=Development;IDE;Java;

  ****************
  RELEVANT DETAILS
  ****************

  - Doesn't affect Ubuntu releases prior to 13.10.

  **************
  TECHNICAL INFO
  **************

  ProblemType: Bug
  DistroRelease: Ubuntu 13.10
  Package: eclipse 3.8.1-1ubuntu1
  ProcVersionSignature: Ubuntu 3.10.0-6.17-generic 3.10.3
  Uname: Linux 3.10.0-6-generic i686
  ApportVersion: 2.11-0ubuntu1
  Architecture: i386
  Date: Sat Aug  3 17:03:55 2013
  InstallationDate: Installed on 2013-07-08 (25 days ago)
  InstallationMedia: Ubuntu 13.10 "Saucy Salamander" - Alpha i386 (20130708)
  MarkForUpload: True
  PackageArchitecture: all
  SourcePackage: eclipse
  UpgradeStatus: No upgrade log present (probably fresh install)

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