You have been subscribed to a public bug by Cody A.W. Somerville 
(cody-somerville):

Binary package hint: xfwm4

For Ubuntu 9.04, update-notifier behavior was changed such that update-
manager will be automatically launched on a regular basis, but behind
other applications.

It does this by launching "update-manager --no-focus-on-map".  On
standard Ubuntu (using metacity), this behavior works properly.

You can manually verify by running that command in a terminal.

On Xubuntu & Mythbuntu (using xfwm4), the update manager window pops up
above your running application.

** Affects: mythbuntu
     Importance: Undecided
         Status: Confirmed

** Affects: update-manager (Ubuntu)
     Importance: Undecided
         Status: New

** Affects: xfwm4 (Ubuntu)
     Importance: High
         Status: Triaged

-- 
update manager launches above apps automatically
https://bugs.edge.launchpad.net/bugs/335928
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Desktop Experience Team, which is a direct subscriber.

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