After resuming, please try this:

killall indicator-applet

Then hit "reload" when prompted.   Does that get the applet back?

-- 
Notification icon disappears after suspend/resume
https://bugs.launchpad.net/bugs/355667
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Applet Developers, which is subscribed to indicator-applet in ubuntu.

Status in “indicator-applet” source package in Ubuntu: New

Bug description:
Binary package hint: notify-osd

After a suspend/resume cycle, the notification icon (the little envelope) is 
gone. Notifications such as from pidgin or the network are still shown, but the 
icon is gone and can not be interacted with.

ProblemType: Bug
Architecture: i386
DistroRelease: Ubuntu 9.04
ExecutablePath: /usr/lib/notify-osd/notify-osd
Package: notify-osd 0.9.9-0ubuntu1
ProcEnviron:
 LANG=en_US.UTF-8
 SHELL=/bin/bash
SourcePackage: notify-osd
Uname: Linux 2.6.28-11-generic i686

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