“When it flash's Linux to the E3 it only uses partitions mtd0,mtd1,mtd3 and 
mtd4, so mtd2 and mtd3 is not used.”

mtd0 - kernel
mtd1 - PBL ( Maybe, I say this because Uboot is flashed there.)
mtd3 - ldr ( File System..? uses mtdblock3 of mtd3)
mtd4 - Root( Root File System,maybe ?? uses mtdblock4 of mtd4)

What are mtd2 and mtd5 used for..??

Trying to find out what each Partition is used for?

Is the Amstrad Install Script running in a Ramdisk..??
You have 2 Uboot images the same, one for flashing the other on for the install 
so you made it a bit like FEL mode where you hold down the FEL Button and can 
boot into Uboot +ramdisk  from you PC thought its usb cable that powers it then 
you can mount the system partition to get into files and folders, that's on 
TheC64 Mini.
Most Developing Boards now have the FEL button.

Just trying to find out more ,it dumps the firmware into 6 partitions, when it 
dumps them, can they be put back the way they are or do they need to be 
converted, so what I am say, are they raw files so they can’t be used the way 
they are at the moment…?

You can backup your firmware with this script without installing Linux on the 
E3,you can say no to installing it, right..?? if so I will try and see if I can 
back the E3 up to get the 6 backup files.

P.S Have not done anything with my E2Plus yet, if I can backup its firmware and 
then flash it back then I can fix the dead E2s out there, but I need help.
If I can backup its firmware I am willing to share it.But don’t worry my E2Plus 
is going no where.. 😊 Just been looking at you page Ralph,One of the problem 
with the E2 is it don’t run Linux, I am trying to find out more about its 
firmware at the moment.
The E1 and E2 use the same Firmware and same CPU Sharp LH79531 ARM (L136 00B), 
the only difference in them is the Plus had ZX Spectrum games. So I might be 
able to use the firmware from the E2 on the E1. The E3 had a different CPU 
because it need a MMU for the Colour LCD screen so need to be more powerful 
than the E1,E2.

Spanner..

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