I am using the easyconfig named Python-2.7.5-goalf-1.5.12-no-OFED.eb (after
building the goalf toolchain). I added the following lines to the exts_list
section of the .eb file in order to install BioPython:
('biopython', '1.63', {
'source_urls': ['http://biopython.org/DIST/'],
}),
It seems to build and package, but errors out on the sanity checking:
ERROR: EasyBuild encountered an exception (at easybuild/software/EasyBuild/
1.10.0/lib/python2.7/site-packages/easybuild_framework-1.10.0-py2.7.egg/
easybuild/main.py:809 in build_and_install_software): autoBuild Failed (last
300 chars): EasyBuild crashed with an error (at easybuild/software/EasyBuild/
1.10.0/lib/python2.7/site-packages/easybuild_framework-1.10.0-py2.7.egg/
easybuild/framework/easyblock.py:1598 in sanity_check_step): Sanity check
failed: sanity checks for ['biopython'] extensions failed!
In the log, I see this:
== 2014-01-28 13:33:42,311 main.EB_Python WARNING Extension: biopython failed
to install, cmd 'python -c "import biopython"' (stdin: None) output: Traceback
(most recent call last):
File "<string>", line 1, in <module>
ImportError: No module named biopython
== 2014-01-28 13:33:42,312 main.EB_Python WARNING Sanity check for biopython
failed: biopython failed to install, cmd 'python -c "import
biopython"' (stdin: None) output: Traceback (most recent call
last):
File "<string>", line 1, in <module>
ImportError: No module named biopython
== 2014-01-28 13:33:42,313 main.EB_Python WARNING Sanity check: sanity checks
for ['biopython'] extensions failed!
I'm new to easybuild, and would appreciate any help. Thanks.
