You are right but that would also depend if in the makefile CC and CXX are being used, isn't it?
In this specific example of freebayes the build system is a little bit weird. It includes different git submodules and make is calling cmake to build dependencies so I didn't want to spend too much time with it....the workaround worked at the first try for me so that was enough for my needs -- Pablo Escobar López HPC systems engineer Biozentrum, University of Basel Swiss Institute of Bioinformatics SIB Email: pablo.escobarlo...@unibas.ch Phone: +41 61 267 21 80 http://www.biozentrum.unibas.ch 2014-10-28 12:06 GMT+01:00 Ward Poelmans <ward.poelm...@ugent.be>: > On Tue, Oct 28, 2014 at 12:04 PM, Pablo Escobar Lopez > <pablo.escobarlo...@unibas.ch> wrote: > > I verified it when I tried the workaround and it seems to work fine, at > > least in this case. > > That's because you are using a gcc toolchain and it is in the path. I > suspect this would fall back to system gcc with an ictce toolchain. > > Ward > -- Pablo Escobar López HPC systems engineer Biozentrum, University of Basel Swiss Institute of Bioinformatics SIB Email: pablo.escobarlo...@unibas.ch Phone: +41 61 267 21 80 http://www.biozentrum.unibas.ch
