Also you can put that list in a configuration file, e.g. I have a config.cfg file with hide-deps = icc,ifort and use EASYBUILD_CONFIGFILES to point to that file. That is good for the environment.
On 18 October 2016 at 13:26, Alan O'Cais <[email protected]> wrote: > hidden = True > is now supported within EB (see https://github.com/hpcugent/ > easybuild-framework/pull/1837), just add that to your GCCcore eb file > > We have a long list of software packages hidden by default, this is the > setting you also might suit you: > -bash-4.2$ echo $EASYBUILD_HIDE_DEPS > ANTLR,APR,APR-util,AT-SPI2-ATK,AT-SPI2-core,ATK,Autoconf, > Automake,Bison,CUSP,Coreutils,DB,DBus,DocBook-XML,Dyninst, > ETSF_IO,FFmpeg,FLTK,FTGL,GCCcore,GDAL,GL2PS,GLEW,GLib,GLPK,GPC,GObject- > Introspection,GTI,GTK+,GTS,Gdk-Pixbuf,Ghostscript, > GraphicsMagick,GtkSourceView,HarfBuzz,JUnit,JasPer,LibTIFF, > LibUUID,Libint,M4,Mesa,NASM,OPARI2,OTF2,PCRE,PDT,PROJ, > Pango,PnMPI,PyCairo,PyGObject,PyQt,Qhull,Qt,Qt5,S-Lang, > SCons,SIP,SQLite,SWIG,Serf,Szip,Tcl,Tk,UDUNITS,XML- > Parser,XZ,XKeyboardConfig,YAXT,Yasm,adwaita-icon-theme, > ant,assimp,binutils,byacc,bzip2,cairo,dbus-glib,damageproto,eudev,expat, > g2clib,g2lib,gc,glproto,gperf,guile,grib_api,gsettings- > desktop-schemas,fixesproto,fontsproto,fontconfig, > freeglut,freetype,gettext,icc,ifort,inputproto,intltool, > itstool,jhbuild,kbproto,libGLU,libICE,libSM,libX11, > libXau,libXaw,libXcursor,libXdamage,libXdmcp,libXext, > libXfixes,libXfont,libXft,libXi,libXinerama,libXmu, > libXpm,libXrandr,libXrender,libXt,libXtst,libcerf, > libcroco,libctl,libdap,libdrm,libdwarf,libelf,libevent, > libffi,libfontenc,libgd,libgeotiff,libglade,libidn, > libjpeg-turbo,libmatheval,libpng,libpciaccess, > libpthread-stubs,libreadline,librsvg,libtool,libunistring, > libunwind,libyaml,libxcb,libxkbcommon,libxml2,libxslt, > makedepend,motif,ncurses,pixman,pkg-config,pkgconfig,popt,pscom,qrupdate, > randrproto,recordproto,renderproto,scrollkeeper,texinfo,util-linux, > wxPropertyGrid,wxWidgets,x264,xbitmaps,xcb-proto,xcb-util, > xcb-util-image,xcb-util-keysyms,xcb-util-renderutil,xcb-util-wm,xextproto, > xineramaproto,xorg-macros,xprop,xproto,xtrans,zlib > > > > On 18 October 2016 at 18:18, Vanzo, Davide <[email protected]> > wrote: > >> Hello, >> Although we wold love to use EB in production there is still one thing >> that stops us from doing so. Since we need to keep the modules list in >> Lmod as clean as possible it is essential for us to be able to tell EB to >> automatically look for dependencies within hidden modules even if not >> explicitly listed as hiddendependencies in the easyconfig files. Let me >> show you with the case I am struggling with. >> >> I want to install GCC but keep the GCCcore module hidden. As you can see >> from the output below if I ask to hide GCCcore it gets built twice and two >> modules get generated: one hidden and one visible. My understanding is that >> it happens because when rebuilding all dependencies with GCCcore (instead >> of the system GCC) they don't have GCCcore within a hiddendependencies list >> and since EB does not automatically scan for hidden modules it builds >> GCCcore again. Am I right? >> >> If so, is there any chance we will see such feature (maybe not by default >> but as an eb option flag) in the future? >> >> If not, what would you suggest? Obviously I could manually edit all >> easyconfig files by adding the hiddendependencies but that may be quite >> annoying in the long term. >> >> In addition, what do you think about being able to specify the >> "hide-deps" list directly into the easyconfig? >> >> Thanks! >> >> >> $ eb GCC-5.4.0-2.26.eb -D --hide-deps=M4,Bison,flex,zlib,binutils,GCCcore >> == temporary log file in case of crash /tmp/eb-bLnY30/easybuild-wrqlU >> H.log >> Dry run: printing build status of easyconfigs and dependencies >> CFGS=/opt/easybuild/software/EasyBuild/2.9.0/lib/python2.7/s >> ite-packages/easybuild_easyconfigs-2.9.0-py2.7.egg/easybuild/easyconfigs >> * [ ] $CFGS/m/M4/M4-1.4.17.eb (module: Core | M4/.1.4.17) >> * [ ] $CFGS/b/Bison/Bison-3.0.4.eb (module: Core | Bison/.3.0.4) >> * [ ] $CFGS/f/flex/flex-2.6.0.eb (module: Core | flex/.2.6.0) >> * [ ] $CFGS/z/zlib/zlib-1.2.8.eb (module: Core | zlib/.1.2.8) >> * [ ] $CFGS/b/binutils/binutils-2.26.eb (module: Core | binutils/.2.26) >> * [ ] $CFGS/g/GCCcore/GCCcore-5.4.0.eb (module: Core | GCCcore/.5.4.0) >> * [ ] $CFGS/g/GCCcore/GCCcore-5.4.0.eb (module: Core | GCCcore/5.4.0) >> * [ ] $CFGS/z/zlib/zlib-1.2.8-GCCcore-5.4.0.eb (module: >> Compiler/GCCcore/5.4.0 | zlib/.1.2.8) >> * [ ] $CFGS/m/M4/M4-1.4.17-GCCcore-5.4.0.eb (module: >> Compiler/GCCcore/5.4.0 | M4/.1.4.17) >> * [ ] $CFGS/b/Bison/Bison-3.0.4-GCCcore-5.4.0.eb (module: >> Compiler/GCCcore/5.4.0 | Bison/.3.0.4) >> * [ ] $CFGS/f/flex/flex-2.6.0-GCCcore-5.4.0.eb (module: >> Compiler/GCCcore/5.4.0 | flex/.2.6.0) >> * [ ] $CFGS/b/binutils/binutils-2.26-GCCcore-5.4.0.eb (module: >> Compiler/GCCcore/5.4.0 | binutils/.2.26) >> * [ ] $CFGS/g/GCC/GCC-5.4.0-2.26.eb (module: Core | GCC/5.4.0-2.26) >> == Temporary log file(s) /tmp/eb-bLnY30/easybuild-wrqlUH.log* have been >> removed. >> == Temporary directory /tmp/eb-bLnY30 has been removed. >> >> >> -- >> Davide Vanzo, PhD >> Application Developer >> Adjunct Assistant Professor of Chemical and Biomolecular Engineering >> Advanced Computing Center for Research and Education (ACCRE) >> Vanderbilt University - Hill Center 201 >> (615)-875-9137 >> www.accre.vanderbilt.edu >> > > > > -- > Dr. Alan O'Cais > E-CAM Software Manager > Juelich Supercomputing Centre > Forschungszentrum Juelich GmbH > 52425 Juelich, Germany > > Phone: +49 2461 61 5213 > Fax: +49 2461 61 6656 > E-mail: [email protected] > WWW: http://www.fz-juelich.de/ias/jsc/EN > > > ------------------------------------------------------------ > ------------------------------------ > ------------------------------------------------------------ > ------------------------------------ > Forschungszentrum Juelich GmbH > 52425 Juelich > Sitz der Gesellschaft: Juelich > Eingetragen im Handelsregister des Amtsgerichts Dueren Nr. HR B 3498 > Vorsitzender des Aufsichtsrats: MinDir Dr. Karl Eugen Huthmacher > Geschaeftsfuehrung: Prof. Dr.-Ing. Wolfgang Marquardt (Vorsitzender), > Karsten Beneke (stellv. Vorsitzender), Prof. Dr.-Ing. Harald Bolt, > Prof. Dr. Sebastian M. Schmidt > ------------------------------------------------------------ > ------------------------------------ > ------------------------------------------------------------ > ------------------------------------ > > -- Dr. Bart E. Oldeman | [email protected] | [email protected] Scientific Computing Analyst / Analyste en calcul scientifique McGill HPC Centre / Centre de Calcul Haute Performance de McGill | http://www.hpc.mcgill.ca Calcul Québec | http://www.calculquebec.ca Compute/Calcul Canada | http://www.computecanada.ca Tel/Tél: 514-396-8926 | Fax/Télécopieur: 514-396-8934
