Great! eb 3.0.1 shows the actual error message, which was easy to fix, so that Seaborn builds without any issues. Thank you! Olaf
Von: [email protected] [mailto:[email protected]] Im Auftrag von Kenneth Hoste Gesendet: Donnerstag, 1. Dezember 2016 12:50 An: [email protected] Betreff: Re: [easybuild] "not enough arguments for format string" in Seaborn PythonPackage Hi Olaf, On 01/12/16 10:09, Olaf Walter wrote: Dear easybuilders, I am getting an error in the "installing" stage when I build the PythonPackage Seaborn. I am running eb 3.0.0 on RHEL 6.8 (which comes with Python 2.6). I tried different things, and also disabled the sanity check. It looks like a problem with the easyconfig, not with Seaborn, but I'm puzzled. Any ideas would be appreciated! This is not a problem with the easyconfig file, it's a silly bug in the error reporting/logging mechanism used by EasyBuild. It is fixed by https://github.com/hpcugent/easybuild-framework/pull/2024, which is included in EasyBuild v3.0.1 which was released yesterday. There is something going wrong, but the real problem is hiding because of the logging bug. regards, Kenneth Best regards, Olaf $ eb --module-syntax=Tcl --modules-tool=EnvironmentModulesC Seaborn-0.7.1-foss-2014b-Python-2.7.12.eb == processing EasyBuild easyconfig /gpfs01/home/easybuild/eb20161117/easyconfigs/Seaborn-0.7.1-foss-2014b-Python-2.7.12.eb == building and installing Seaborn/0.7.1-foss-2014b-Python-2.7.12... == fetching files... == creating build dir, resetting environment... == unpacking... == patching... == preparing... == configuring... == building... == testing... == installing... Traceback (most recent call last): File "/usr/lib64/python2.6/logging/handlers.py", line 76, in emit if self.shouldRollover(record): File "/usr/lib64/python2.6/logging/handlers.py", line 149, in shouldRollover msg = "%s\n" % self.format(record) File "/usr/lib64/python2.6/logging/__init__.py", line 662, in format return fmt.format(record) File "/usr/lib64/python2.6/logging/__init__.py", line 444, in format record.message = record.getMessage() File "/usr/lib64/python2.6/logging/__init__.py", line 314, in getMessage msg = msg % self.args TypeError: not enough arguments for format string Traceback (most recent call last): File "/usr/lib64/python2.6/logging/handlers.py", line 76, in emit if self.shouldRollover(record): File "/usr/lib64/python2.6/logging/handlers.py", line 149, in shouldRollover msg = "%s\n" % self.format(record) File "/usr/lib64/python2.6/logging/__init__.py", line 662, in format return fmt.format(record) File "/usr/lib64/python2.6/logging/__init__.py", line 444, in format record.message = record.getMessage() File "/usr/lib64/python2.6/logging/__init__.py", line 314, in getMessage msg = msg % self.args TypeError: not enough arguments for format string Traceback (most recent call last): File "/usr/lib64/python2.6/logging/handlers.py", line 76, in emit if self.shouldRollover(record): File "/usr/lib64/python2.6/logging/handlers.py", line 149, in shouldRollover msg = "%s\n" % self.format(record) File "/usr/lib64/python2.6/logging/__init__.py", line 662, in format return fmt.format(record) File "/usr/lib64/python2.6/logging/__init__.py", line 444, in format record.message = record.getMessage() File "/usr/lib64/python2.6/logging/__init__.py", line 314, in getMessage msg = msg % self.args TypeError: not enough arguments for format string == FAILED: Installation ended unsuccessfully (build directory: /tmp/Seaborn/0.7.1/foss-2014b-Python-2.7.12): build failed (first 300 chars): cmd " /gpfs01/sw/eb20161117/software/Python/2.7.12-foss-2014b/bin/python setup.py install --prefix=/gpfs01/sw/eb20161117/software/Seaborn/0.7.1-foss-2014b-Python-2.7.12 " exited with exitcode 1 and output: running install running bdist_egg running egg_info creating seaborn.egg-info writing requireme == Results of the build can be found in the log file(s) /tmp/eb-QeRMV8/easybuild-Seaborn-0.7.1-20161201.093117.QHnBL.log ERROR: Build of /gpfs01/home/easybuild/eb20161117/easyconfigs/Seaborn-0.7.1-foss-2014b-Python-2.7.12.eb failed (err: 'build failed (first 300 chars): cmd " /gpfs01/sw/eb20161117/software/Python/2.7.12-foss-2014b/bin/python setup.py install --prefix=/gpfs01/sw/eb20161117/software/Seaborn/0.7.1-foss-2014b-Python-2.7.12 " exited with exitcode 1 and output:\nrunning install\nrunning bdist_egg\nrunning egg_info\ncreating seaborn.egg-info\nwriting requireme') This is my easyconfig: # This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild # Author: Pablo Escobar Lopez # Swiss Institute of Bioinformatics (SIB) # Biozentrum - University of Basel easyblock = "PythonPackage" name = 'Seaborn' version = '0.7.1' homepage = 'http://stanford.edu/~mwaskom/software/seaborn/' description = """ Seaborn is a Python visualization library based on matplotlib. It provides a high-level interface for drawing attractive statistical graphics. """ toolchain = {'name': 'foss', 'version': '2014b'} source_urls = ['https://github.com/mwaskom/seaborn/archive/'] sources = ['v%(version)s.tar.gz'] python = 'Python' pyver = '2.7.12' versionsuffix = "-%s-%s" % (python, pyver) dependencies = [ (python, pyver), ('Tk', '8.6.1'), ] #pyshortver = '.'.join(pyver.split('.')[:2]) #sanity_check_paths = { # 'files': [], # 'dirs': ['lib/python%(pyver)s/site-packages/seaborn-%%(version)s-py%(pyver)s.egg' % {'pyver': pyshortver}], #} moduleclass = 'bio' The log file looks like this: == 2016-12-01 09:31:17,394 easyblock.py:261 INFO This is EasyBuild 3.0.0 (framework: 3.0.0, easyblocks: 3.0.0) on host byhm01. == 2016-12-01 09:31:17,395 easyblock.py:267 INFO This is easyblock PythonPackage from module easybuild.easyblocks.generic.pythonpackage (/gpfs01/sw/easybuild/3.0.0/lib/python2.6/site-packages/easybuild_easyblocks-3.0.0-py2.6.egg/easybuild/easyblocks/generic/pythonpackage.pyo) == 2016-12-01 09:31:17,395 easyblock.py:753 INFO Build dir set to /tmp/Seaborn/0.7.1/foss-2014b-Python-2.7.12 == 2016-12-01 09:31:17,395 easyblock.py:792 INFO Software install dir set to /gpfs01/sw/eb20161117/software/Seaborn/0.7.1-foss-2014b-Python-2.7.12 == 2016-12-01 09:31:17,396 easyblock.py:797 INFO Module install dir set to /gpfs01/sw/eb20161117/modules/all == 2016-12-01 09:31:17,396 easyblock.py:246 INFO Init completed for application name Seaborn version 0.7.1 == 2016-12-01 09:31:17,396 easyblock.py:2472 INFO Obtained application instance of for Seaborn (easyblock: PythonPackage) == 2016-12-01 09:31:17,397 build_log.py:220 INFO building and installing Seaborn/0.7.1-foss-2014b-Python-2.7.12... == 2016-12-01 09:31:17,397 build_log.py:220 INFO fetching files... == 2016-12-01 09:31:17,397 easyblock.py:2266 INFO Starting fetch step == 2016-12-01 09:31:17,397 easyblock.py:2269 INFO Running method fetch_step part of step fetch == 2016-12-01 09:31:17,398 easyblock.py:1446 WARNING Easyconfig does not specify an EasyBuild-version (key 'easybuild_version')! Assuming the latest version == 2016-12-01 09:31:17,398 filetools.py:229 INFO Command eb found at /gpfs01/sw/easybuild/3.0.0/bin/eb == 2016-12-01 09:31:17,399 easyblock.py:590 INFO Found file v0.7.1.tar.gz at /gpfs01/sw/SOURCES/s/Seaborn/v0.7.1.tar.gz == 2016-12-01 09:31:17,399 easyblock.py:350 INFO Added sources: [{'path': '/gpfs01/sw/SOURCES/s/Seaborn/v0.7.1.tar.gz', 'cmd': None, 'finalpath': '/tmp/Seaborn/0.7.1/foss-2014b-Python-2.7.12', 'name': 'v0.7.1.tar.gz', 'checksum': None}] == 2016-12-01 09:31:17,400 easyblock.py:1487 INFO no patches provided == 2016-12-01 09:31:17,401 easyblock.py:1496 INFO md5 checksum for /gpfs01/sw/SOURCES/s/Seaborn/v0.7.1.tar.gz: f66200e3dbf0ebdd9bbdeba73303c974 == 2016-12-01 09:31:17,402 easyblock.py:1513 INFO Checking dirs that need to be created: ['/gpfs01/sw/eb20161117/software/Seaborn/0.7.1-foss-2014b-Python-2.7.12', '/gpfs01/sw/eb20161117/modules/all/Seaborn', '/gpfs01/sw/eb20161117/modules/bio/Seaborn'] == 2016-12-01 09:31:17,402 build_log.py:220 INFO creating build dir, resetting environment... == 2016-12-01 09:31:17,402 easyblock.py:2266 INFO Starting ready step == 2016-12-01 09:31:17,403 easyblock.py:2269 INFO Running method check_readiness_step part of step ready == 2016-12-01 09:31:17,431 easyblock.py:1404 INFO Setting parallelism: 8 == 2016-12-01 09:31:17,455 easyblock.py:2269 INFO Running method make_builddir part of step ready == 2016-12-01 09:31:17,455 easyblock.py:817 INFO Found old directory /tmp/Seaborn/0.7.1/foss-2014b-Python-2.7.12 == 2016-12-01 09:31:17,462 filetools.py:1058 INFO Path /tmp/Seaborn/0.7.1/foss-2014b-Python-2.7.12 successfully removed. == 2016-12-01 09:31:17,462 easyblock.py:824 INFO Removed old directory /tmp/Seaborn/0.7.1/foss-2014b-Python-2.7.12 == 2016-12-01 09:31:17,463 filetools.py:953 INFO Creating directory /tmp/Seaborn/0.7.1/foss-2014b-Python-2.7.12 (parents: True, set_gid: False, sticky: False) == 2016-12-01 09:31:17,463 easyblock.py:2269 INFO Running method env_reset_changes part of step ready == 2016-12-01 09:31:17,463 easyblock.py:2269 INFO Running method handle_iterate_opts part of step ready == 2016-12-01 09:31:17,464 build_log.py:220 INFO unpacking... == 2016-12-01 09:31:17,464 easyblock.py:2266 INFO Starting source step == 2016-12-01 09:31:17,464 easyblock.py:2269 INFO Running method checksum_step part of step source == 2016-12-01 09:31:17,465 easyblock.py:1529 INFO Checksum verification for /gpfs01/sw/SOURCES/s/Seaborn/v0.7.1.tar.gz using None passed. == 2016-12-01 09:31:17,465 easyblock.py:2269 INFO Running method extract_step part of step source == 2016-12-01 09:31:17,465 easyblock.py:1536 INFO Unpacking source v0.7.1.tar.gz == 2016-12-01 09:31:17,732 build_log.py:220 INFO patching... == 2016-12-01 09:31:17,733 easyblock.py:2266 INFO Starting patch step == 2016-12-01 09:31:17,733 easyblock.py:2269 INFO Running method patch_step part of step patch == 2016-12-01 09:31:17,734 build_log.py:220 INFO preparing... == 2016-12-01 09:31:17,734 easyblock.py:2266 INFO Starting prepare step == 2016-12-01 09:31:17,734 easyblock.py:2269 INFO Running method prepare_step part of step prepare == 2016-12-01 09:31:17,950 toolchain.py:594 INFO List of toolchain dependency modules and toolchain definition match! == 2016-12-01 09:31:17,952 options.py:90 WARNING option: option with name _opt_CC returns None == 2016-12-01 09:31:17,952 options.py:90 WARNING option: option with name _opt_CXX returns None == 2016-12-01 09:31:17,952 options.py:90 WARNING option: option with name _opt_F77 returns None == 2016-12-01 09:31:17,952 options.py:90 WARNING option: option with name _opt_F90 returns None == 2016-12-01 09:31:17,953 options.py:90 WARNING option: option with name _opt_FC returns None == 2016-12-01 09:31:17,963 variables.py:200 WARNING flags_for_subdirs: directory /gpfs01/sw/eb20161117/software/OpenBLAS/0.2.9-GCC-4.8.3-LAPACK-3.5.0/lib64 was not found == 2016-12-01 09:31:17,970 variables.py:200 WARNING flags_for_subdirs: directory /gpfs01/sw/eb20161117/software/OpenBLAS/0.2.9-GCC-4.8.3-LAPACK-3.5.0/lib64 was not found == 2016-12-01 09:31:17,977 variables.py:200 WARNING flags_for_subdirs: directory /gpfs01/sw/eb20161117/software/ScaLAPACK/2.0.2-gompi-2014b-OpenBLAS-0.2.9-LAPACK-3.5.0/lib64 was not found == 2016-12-01 09:31:17,979 variables.py:200 WARNING flags_for_subdirs: directory /gpfs01/sw/eb20161117/software/FFTW/3.3.4-gompi-2014b/lib64 was not found == 2016-12-01 09:31:17,981 variables.py:200 WARNING flags_for_subdirs: directory /gpfs01/sw/eb20161117/software/Python/2.7.12-foss-2014b/lib64 was not found == 2016-12-01 09:31:17,982 variables.py:200 WARNING flags_for_subdirs: directory /gpfs01/sw/eb20161117/software/Tk/8.6.1-foss-2014b/lib64 was not found == 2016-12-01 09:31:17,987 environment.py:97 INFO Environment variable BLAS_INC_DIR set to /gpfs01/sw/eb20161117/software/OpenBLAS/0.2.9-GCC-4.8.3-LAPACK-3.5.0/include (previously undefined) == 2016-12-01 09:31:17,988 environment.py:97 INFO Environment variable EBVARBLAS_INC_DIR set to /gpfs01/sw/eb20161117/software/OpenBLAS/0.2.9-GCC-4.8.3-LAPACK-3.5.0/include (previously undefined) == 2016-12-01 09:31:17,988 environment.py:97 INFO Environment variable BLAS_LAPACK_INC_DIR set to /gpfs01/sw/eb20161117/software/OpenBLAS/0.2.9-GCC-4.8.3-LAPACK-3.5.0/include (previously undefined) == 2016-12-01 09:31:17,988 environment.py:97 INFO Environment variable EBVARBLAS_LAPACK_INC_DIR set to /gpfs01/sw/eb20161117/software/OpenBLAS/0.2.9-GCC-4.8.3-LAPACK-3.5.0/include (previously undefined) == 2016-12-01 09:31:17,988 environment.py:97 INFO Environment variable BLAS_LAPACK_LIB_DIR set to /gpfs01/sw/eb20161117/software/OpenBLAS/0.2.9-GCC-4.8.3-LAPACK-3.5.0/lib (previously undefined) == 2016-12-01 09:31:17,989 environment.py:97 INFO Environment variable EBVARBLAS_LAPACK_LIB_DIR set to /gpfs01/sw/eb20161117/software/OpenBLAS/0.2.9-GCC-4.8.3-LAPACK-3.5.0/lib (previously undefined) == 2016-12-01 09:31:17,989 environment.py:97 INFO Environment variable BLAS_LAPACK_MT_STATIC_LIBS set to libopenblas.a,libgfortran.a (previously undefined) == 2016-12-01 09:31:17,989 environment.py:97 INFO Environment variable EBVARBLAS_LAPACK_MT_STATIC_LIBS set to libopenblas.a,libgfortran.a (previously undefined) == 2016-12-01 09:31:17,989 environment.py:97 INFO Environment variable BLAS_LAPACK_STATIC_LIBS set to libopenblas.a,libgfortran.a (previously undefined) == 2016-12-01 09:31:17,990 environment.py:97 INFO Environment variable EBVARBLAS_LAPACK_STATIC_LIBS set to libopenblas.a,libgfortran.a (previously undefined) == 2016-12-01 09:31:17,990 environment.py:97 INFO Environment variable BLAS_LIB_DIR set to /gpfs01/sw/eb20161117/software/OpenBLAS/0.2.9-GCC-4.8.3-LAPACK-3.5.0/lib (previously undefined) == 2016-12-01 09:31:17,990 environment.py:97 INFO Environment variable EBVARBLAS_LIB_DIR set to /gpfs01/sw/eb20161117/software/OpenBLAS/0.2.9-GCC-4.8.3-LAPACK-3.5.0/lib (previously undefined) == 2016-12-01 09:31:17,990 environment.py:97 INFO Environment variable BLAS_MT_STATIC_LIBS set to libopenblas.a,libgfortran.a (previously undefined) == 2016-12-01 09:31:17,991 environment.py:97 INFO Environment variable EBVARBLAS_MT_STATIC_LIBS set to libopenblas.a,libgfortran.a (previously undefined) == 2016-12-01 09:31:17,991 environment.py:97 INFO Environment variable BLAS_STATIC_LIBS set to libopenblas.a,libgfortran.a (previously undefined) == 2016-12-01 09:31:17,991 environment.py:97 INFO Environment variable EBVARBLAS_STATIC_LIBS set to libopenblas.a,libgfortran.a (previously undefined) == 2016-12-01 09:31:17,991 environment.py:97 INFO Environment variable CC set to gcc (previously undefined) == 2016-12-01 09:31:17,992 environment.py:97 INFO Environment variable EBVARCC set to gcc (previously undefined) == 2016-12-01 09:31:17,992 environment.py:97 INFO Environment variable CFLAGS set to -O2 -march=native (previously undefined) == 2016-12-01 09:31:17,992 environment.py:97 INFO Environment variable EBVARCFLAGS set to -O2 -march=native (previously undefined) == 2016-12-01 09:31:17,992 environment.py:97 INFO Environment variable CPPFLAGS set to -I/gpfs01/sw/eb20161117/software/OpenBLAS/0.2.9-GCC-4.8.3-LAPACK-3.5.0/include -I/gpfs01/sw/eb20161117/software/ScaLAPACK/2.0.2-gompi-2014b-OpenBLAS-0.2.9-LAPACK-3.5.0/include -I/gpfs01/sw/eb20161117/software/FFTW/3.3.4-gompi-2014b/include -I/gpfs01/sw/eb20161117/software/Python/2.7.12-foss-2014b/include -I/gpfs01/sw/eb20161117/software/Tk/8.6.1-foss-2014b/include (previously undefined) == 2016-12-01 09:31:17,993 environment.py:97 INFO Environment variable EBVARCPPFLAGS set to -I/gpfs01/sw/eb20161117/software/OpenBLAS/0.2.9-GCC-4.8.3-LAPACK-3.5.0/include -I/gpfs01/sw/eb20161117/software/ScaLAPACK/2.0.2-gompi-2014b-OpenBLAS-0.2.9-LAPACK-3.5.0/include -I/gpfs01/sw/eb20161117/software/FFTW/3.3.4-gompi-2014b/include -I/gpfs01/sw/eb20161117/software/Python/2.7.12-foss-2014b/include -I/gpfs01/sw/eb20161117/software/Tk/8.6.1-foss-2014b/include (previously undefined) == 2016-12-01 09:31:17,993 environment.py:97 INFO Environment variable CXX set to g++ (previously undefined) == 2016-12-01 09:31:17,993 environment.py:97 INFO Environment variable EBVARCXX set to g++ (previously undefined) == 2016-12-01 09:31:17,993 environment.py:97 INFO Environment variable CXXFLAGS set to -O2 -march=native (previously undefined) == 2016-12-01 09:31:17,994 environment.py:97 INFO Environment variable EBVARCXXFLAGS set to -O2 -march=native (previously undefined) == 2016-12-01 09:31:17,994 environment.py:97 INFO Environment variable F77 set to gfortran (previously undefined) == 2016-12-01 09:31:17,994 environment.py:97 INFO Environment variable EBVARF77 set to gfortran (previously undefined) == 2016-12-01 09:31:17,994 environment.py:97 INFO Environment variable F90 set to gfortran (previously undefined) == 2016-12-01 09:31:17,995 environment.py:97 INFO Environment variable EBVARF90 set to gfortran (previously undefined) == 2016-12-01 09:31:17,995 environment.py:97 INFO Environment variable F90FLAGS set to -O2 -march=native (previously undefined) == 2016-12-01 09:31:17,995 environment.py:97 INFO Environment variable EBVARF90FLAGS set to -O2 -march=native (previously undefined) == 2016-12-01 09:31:17,995 environment.py:97 INFO Environment variable FC set to gfortran (previously undefined) == 2016-12-01 09:31:17,996 environment.py:97 INFO Environment variable EBVARFC set to gfortran (previously undefined) == 2016-12-01 09:31:17,996 environment.py:97 INFO Environment variable FCFLAGS set to -O2 -march=native (previously undefined) == 2016-12-01 09:31:17,996 environment.py:97 INFO Environment variable EBVARFCFLAGS set to -O2 -march=native (previously undefined) == 2016-12-01 09:31:17,996 environment.py:97 INFO Environment variable FFLAGS set to -O2 -march=native (previously undefined) == 2016-12-01 09:31:17,997 environment.py:97 INFO Environment variable EBVARFFLAGS set to -O2 -march=native (previously undefined) == 2016-12-01 09:31:17,997 environment.py:97 INFO Environment variable FFTW_INC_DIR set to /gpfs01/sw/eb20161117/software/FFTW/3.3.4-gompi-2014b/include (previously undefined) == 2016-12-01 09:31:17,997 environment.py:97 INFO Environment variable EBVARFFTW_INC_DIR set to /gpfs01/sw/eb20161117/software/FFTW/3.3.4-gompi-2014b/include (previously undefined) == 2016-12-01 09:31:17,997 environment.py:97 INFO Environment variable FFTW_LIB_DIR set to /gpfs01/sw/eb20161117/software/FFTW/3.3.4-gompi-2014b/lib (previously undefined) == 2016-12-01 09:31:17,998 environment.py:97 INFO Environment variable EBVARFFTW_LIB_DIR set to /gpfs01/sw/eb20161117/software/FFTW/3.3.4-gompi-2014b/lib (previously undefined) == 2016-12-01 09:31:17,998 environment.py:97 INFO Environment variable FFTW_STATIC_LIBS set to libfftw3.a (previously undefined) == 2016-12-01 09:31:17,998 environment.py:97 INFO Environment variable EBVARFFTW_STATIC_LIBS set to libfftw3.a (previously undefined) == 2016-12-01 09:31:17,998 environment.py:97 INFO Environment variable FFTW_STATIC_LIBS_MT set to -fftw3 -pthread (previously undefined) == 2016-12-01 09:31:17,998 environment.py:97 INFO Environment variable EBVARFFTW_STATIC_LIBS_MT set to -fftw3 -pthread (previously undefined) == 2016-12-01 09:31:17,999 environment.py:97 INFO Environment variable FFT_INC_DIR set to /gpfs01/sw/eb20161117/software/FFTW/3.3.4-gompi-2014b/include (previously undefined) == 2016-12-01 09:31:17,999 environment.py:97 INFO Environment variable EBVARFFT_INC_DIR set to /gpfs01/sw/eb20161117/software/FFTW/3.3.4-gompi-2014b/include (previously undefined) == 2016-12-01 09:31:17,999 environment.py:97 INFO Environment variable FFT_LIB_DIR set to /gpfs01/sw/eb20161117/software/FFTW/3.3.4-gompi-2014b/lib (previously undefined) == 2016-12-01 09:31:17,999 environment.py:97 INFO Environment variable EBVARFFT_LIB_DIR set to /gpfs01/sw/eb20161117/software/FFTW/3.3.4-gompi-2014b/lib (previously undefined) == 2016-12-01 09:31:18,000 environment.py:97 INFO Environment variable FFT_STATIC_LIBS set to libfftw3.a (previously undefined) == 2016-12-01 09:31:18,000 environment.py:97 INFO Environment variable EBVARFFT_STATIC_LIBS set to libfftw3.a (previously undefined) == 2016-12-01 09:31:18,000 environment.py:97 INFO Environment variable FFT_STATIC_LIBS_MT set to libfftw3.a,libpthread.a (previously undefined) == 2016-12-01 09:31:18,000 environment.py:97 INFO Environment variable EBVARFFT_STATIC_LIBS_MT set to libfftw3.a,libpthread.a (previously undefined) == 2016-12-01 09:31:18,001 environment.py:97 INFO Environment variable FLIBS set to -lgfortran (previously undefined) == 2016-12-01 09:31:18,001 environment.py:97 INFO Environment variable EBVARFLIBS set to -lgfortran (previously undefined) == 2016-12-01 09:31:18,001 environment.py:97 INFO Environment variable LAPACK_INC_DIR set to /gpfs01/sw/eb20161117/software/OpenBLAS/0.2.9-GCC-4.8.3-LAPACK-3.5.0/include (previously undefined) == 2016-12-01 09:31:18,001 environment.py:97 INFO Environment variable EBVARLAPACK_INC_DIR set to /gpfs01/sw/eb20161117/software/OpenBLAS/0.2.9-GCC-4.8.3-LAPACK-3.5.0/include (previously undefined) == 2016-12-01 09:31:18,002 environment.py:97 INFO Environment variable LAPACK_LIB_DIR set to /gpfs01/sw/eb20161117/software/OpenBLAS/0.2.9-GCC-4.8.3-LAPACK-3.5.0/lib (previously undefined) == 2016-12-01 09:31:18,002 environment.py:97 INFO Environment variable EBVARLAPACK_LIB_DIR set to /gpfs01/sw/eb20161117/software/OpenBLAS/0.2.9-GCC-4.8.3-LAPACK-3.5.0/lib (previously undefined) == 2016-12-01 09:31:18,002 environment.py:97 INFO Environment variable LAPACK_MT_STATIC_LIBS set to libopenblas.a,libgfortran.a (previously undefined) == 2016-12-01 09:31:18,002 environment.py:97 INFO Environment variable EBVARLAPACK_MT_STATIC_LIBS set to libopenblas.a,libgfortran.a (previously undefined) == 2016-12-01 09:31:18,003 environment.py:97 INFO Environment variable LAPACK_STATIC_LIBS set to libopenblas.a,libgfortran.a (previously undefined) == 2016-12-01 09:31:18,003 environment.py:97 INFO Environment variable EBVARLAPACK_STATIC_LIBS set to libopenblas.a,libgfortran.a (previously undefined) == 2016-12-01 09:31:18,003 environment.py:97 INFO Environment variable LDFLAGS set to -L/gpfs01/sw/eb20161117/software/GCC/4.8.3/lib64 -L/gpfs01/sw/eb20161117/software/GCC/4.8.3/lib -L/gpfs01/sw/eb20161117/software/OpenBLAS/0.2.9-GCC-4.8.3-LAPACK-3.5.0/lib -L/gpfs01/sw/eb20161117/software/ScaLAPACK/2.0.2-gompi-2014b-OpenBLAS-0.2.9-LAPACK-3.5.0/lib -L/gpfs01/sw/eb20161117/software/FFTW/3.3.4-gompi-2014b/lib -L/gpfs01/sw/eb20161117/software/Python/2.7.12-foss-2014b/lib -L/gpfs01/sw/eb20161117/software/Tk/8.6.1-foss-2014b/lib (previously undefined) == 2016-12-01 09:31:18,003 environment.py:97 INFO Environment variable EBVARLDFLAGS set to -L/gpfs01/sw/eb20161117/software/GCC/4.8.3/lib64 -L/gpfs01/sw/eb20161117/software/GCC/4.8.3/lib -L/gpfs01/sw/eb20161117/software/OpenBLAS/0.2.9-GCC-4.8.3-LAPACK-3.5.0/lib -L/gpfs01/sw/eb20161117/software/ScaLAPACK/2.0.2-gompi-2014b-OpenBLAS-0.2.9-LAPACK-3.5.0/lib -L/gpfs01/sw/eb20161117/software/FFTW/3.3.4-gompi-2014b/lib -L/gpfs01/sw/eb20161117/software/Python/2.7.12-foss-2014b/lib -L/gpfs01/sw/eb20161117/software/Tk/8.6.1-foss-2014b/lib (previously undefined) == 2016-12-01 09:31:18,004 environment.py:97 INFO Environment variable LIBBLAS set to -lopenblas -lgfortran (previously undefined) == 2016-12-01 09:31:18,004 environment.py:97 INFO Environment variable EBVARLIBBLAS set to -lopenblas -lgfortran (previously undefined) == 2016-12-01 09:31:18,004 environment.py:97 INFO Environment variable LIBBLAS_MT set to -lopenblas -lgfortran (previously undefined) == 2016-12-01 09:31:18,004 environment.py:97 INFO Environment variable EBVARLIBBLAS_MT set to -lopenblas -lgfortran (previously undefined) == 2016-12-01 09:31:18,005 environment.py:97 INFO Environment variable LIBFFT set to -lfftw3 (previously undefined) == 2016-12-01 09:31:18,005 environment.py:97 INFO Environment variable EBVARLIBFFT set to -lfftw3 (previously undefined) == 2016-12-01 09:31:18,005 environment.py:97 INFO Environment variable LIBFFT_MT set to -lfftw3 -lpthread (previously undefined) == 2016-12-01 09:31:18,005 environment.py:97 INFO Environment variable EBVARLIBFFT_MT set to -lfftw3 -lpthread (previously undefined) == 2016-12-01 09:31:18,006 environment.py:97 INFO Environment variable LIBLAPACK set to -lopenblas -lgfortran (previously undefined) == 2016-12-01 09:31:18,006 environment.py:97 INFO Environment variable EBVARLIBLAPACK set to -lopenblas -lgfortran (previously undefined) == 2016-12-01 09:31:18,006 environment.py:97 INFO Environment variable LIBLAPACK_MT set to -lopenblas -lgfortran (previously undefined) == 2016-12-01 09:31:18,006 environment.py:97 INFO Environment variable EBVARLIBLAPACK_MT set to -lopenblas -lgfortran (previously undefined) == 2016-12-01 09:31:18,007 environment.py:97 INFO Environment variable LIBLAPACK_MT_ONLY set to -lopenblas -lgfortran (previously undefined) == 2016-12-01 09:31:18,007 environment.py:97 INFO Environment variable EBVARLIBLAPACK_MT_ONLY set to -lopenblas -lgfortran (previously undefined) == 2016-12-01 09:31:18,007 environment.py:97 INFO Environment variable LIBLAPACK_ONLY set to -lopenblas -lgfortran (previously undefined) == 2016-12-01 09:31:18,007 environment.py:97 INFO Environment variable EBVARLIBLAPACK_ONLY set to -lopenblas -lgfortran (previously undefined) == 2016-12-01 09:31:18,008 environment.py:97 INFO Environment variable LIBS set to -lm -lpthread (previously undefined) == 2016-12-01 09:31:18,008 environment.py:97 INFO Environment variable EBVARLIBS set to -lm -lpthread (previously undefined) == 2016-12-01 09:31:18,008 environment.py:97 INFO Environment variable LIBSCALAPACK set to -lscalapack -lopenblas -lgfortran (previously undefined) == 2016-12-01 09:31:18,008 environment.py:97 INFO Environment variable EBVARLIBSCALAPACK set to -lscalapack -lopenblas -lgfortran (previously undefined) == 2016-12-01 09:31:18,009 environment.py:97 INFO Environment variable LIBSCALAPACK_MT set to -lscalapack -lopenblas -lpthread -lgfortran (previously undefined) == 2016-12-01 09:31:18,009 environment.py:97 INFO Environment variable EBVARLIBSCALAPACK_MT set to -lscalapack -lopenblas -lpthread -lgfortran (previously undefined) == 2016-12-01 09:31:18,009 environment.py:97 INFO Environment variable LIBSCALAPACK_MT_ONLY set to -lscalapack -lgfortran (previously undefined) == 2016-12-01 09:31:18,009 environment.py:97 INFO Environment variable EBVARLIBSCALAPACK_MT_ONLY set to -lscalapack -lgfortran (previously undefined) == 2016-12-01 09:31:18,010 environment.py:97 INFO Environment variable LIBSCALAPACK_ONLY set to -lscalapack -lgfortran (previously undefined) == 2016-12-01 09:31:18,010 environment.py:97 INFO Environment variable EBVARLIBSCALAPACK_ONLY set to -lscalapack -lgfortran (previously undefined) == 2016-12-01 09:31:18,010 environment.py:97 INFO Environment variable MPICC set to mpicc (previously undefined) == 2016-12-01 09:31:18,010 environment.py:97 INFO Environment variable EBVARMPICC set to mpicc (previously undefined) == 2016-12-01 09:31:18,011 environment.py:97 INFO Environment variable MPICXX set to mpicxx (previously undefined) == 2016-12-01 09:31:18,011 environment.py:97 INFO Environment variable EBVARMPICXX set to mpicxx (previously undefined) == 2016-12-01 09:31:18,011 environment.py:97 INFO Environment variable MPIF77 set to mpifort (previously undefined) == 2016-12-01 09:31:18,011 environment.py:97 INFO Environment variable EBVARMPIF77 set to mpifort (previously undefined) == 2016-12-01 09:31:18,012 environment.py:97 INFO Environment variable MPIF90 set to mpifort (previously undefined) == 2016-12-01 09:31:18,012 environment.py:97 INFO Environment variable EBVARMPIF90 set to mpifort (previously undefined) == 2016-12-01 09:31:18,012 environment.py:97 INFO Environment variable MPIFC set to mpifort (previously undefined) == 2016-12-01 09:31:18,012 environment.py:97 INFO Environment variable EBVARMPIFC set to mpifort (previously undefined) == 2016-12-01 09:31:18,013 environment.py:97 INFO Environment variable MPI_INC_DIR set to /gpfs01/sw/eb20161117/software/OpenMPI/1.8.1-GCC-4.8.3/include (previously undefined) == 2016-12-01 09:31:18,013 environment.py:97 INFO Environment variable EBVARMPI_INC_DIR set to /gpfs01/sw/eb20161117/software/OpenMPI/1.8.1-GCC-4.8.3/include (previously undefined) == 2016-12-01 09:31:18,013 environment.py:97 INFO Environment variable MPI_LIB_DIR set to /gpfs01/sw/eb20161117/software/OpenMPI/1.8.1-GCC-4.8.3/lib (previously undefined) == 2016-12-01 09:31:18,013 environment.py:97 INFO Environment variable EBVARMPI_LIB_DIR set to /gpfs01/sw/eb20161117/software/OpenMPI/1.8.1-GCC-4.8.3/lib (previously undefined) == 2016-12-01 09:31:18,014 environment.py:97 INFO Environment variable MPI_LIB_SHARED set to /gpfs01/sw/eb20161117/software/OpenMPI/1.8.1-GCC-4.8.3/lib/libmpi.so (previously undefined) == 2016-12-01 09:31:18,014 environment.py:97 INFO Environment variable EBVARMPI_LIB_SHARED set to /gpfs01/sw/eb20161117/software/OpenMPI/1.8.1-GCC-4.8.3/lib/libmpi.so (previously undefined) == 2016-12-01 09:31:18,014 environment.py:97 INFO Environment variable MPI_LIB_STATIC set to (previously undefined) == 2016-12-01 09:31:18,014 environment.py:97 INFO Environment variable EBVARMPI_LIB_STATIC set to (previously undefined) == 2016-12-01 09:31:18,015 environment.py:97 INFO Environment variable OMPI_CC set to gcc (previously undefined) == 2016-12-01 09:31:18,015 environment.py:97 INFO Environment variable EBVAROMPI_CC set to gcc (previously undefined) == 2016-12-01 09:31:18,015 environment.py:97 INFO Environment variable OMPI_CXX set to g++ (previously undefined) == 2016-12-01 09:31:18,015 environment.py:97 INFO Environment variable EBVAROMPI_CXX set to g++ (previously undefined) == 2016-12-01 09:31:18,016 environment.py:97 INFO Environment variable OMPI_F77 set to gfortran (previously undefined) == 2016-12-01 09:31:18,016 environment.py:97 INFO Environment variable EBVAROMPI_F77 set to gfortran (previously undefined) == 2016-12-01 09:31:18,016 environment.py:97 INFO Environment variable OMPI_F90 set to gfortran (previously undefined) == 2016-12-01 09:31:18,017 environment.py:97 INFO Environment variable EBVAROMPI_F90 set to gfortran (previously undefined) == 2016-12-01 09:31:18,017 environment.py:97 INFO Environment variable OMPI_FC set to gfortran (previously undefined) == 2016-12-01 09:31:18,017 environment.py:97 INFO Environment variable EBVAROMPI_FC set to gfortran (previously undefined) == 2016-12-01 09:31:18,017 environment.py:97 INFO Environment variable OPTFLAGS set to -O2 -march=native (previously undefined) == 2016-12-01 09:31:18,018 environment.py:97 INFO Environment variable EBVAROPTFLAGS set to -O2 -march=native (previously undefined) == 2016-12-01 09:31:18,018 environment.py:97 INFO Environment variable PRECFLAGS set to (previously undefined) == 2016-12-01 09:31:18,018 environment.py:97 INFO Environment variable EBVARPRECFLAGS set to (previously undefined) == 2016-12-01 09:31:18,018 environment.py:97 INFO Environment variable SCALAPACK_INC_DIR set to /gpfs01/sw/eb20161117/software/ScaLAPACK/2.0.2-gompi-2014b-OpenBLAS-0.2.9-LAPACK-3.5.0/include (previously undefined) == 2016-12-01 09:31:18,019 environment.py:97 INFO Environment variable EBVARSCALAPACK_INC_DIR set to /gpfs01/sw/eb20161117/software/ScaLAPACK/2.0.2-gompi-2014b-OpenBLAS-0.2.9-LAPACK-3.5.0/include (previously undefined) == 2016-12-01 09:31:18,019 environment.py:97 INFO Environment variable SCALAPACK_LIB_DIR set to /gpfs01/sw/eb20161117/software/ScaLAPACK/2.0.2-gompi-2014b-OpenBLAS-0.2.9-LAPACK-3.5.0/lib (previously undefined) == 2016-12-01 09:31:18,019 environment.py:97 INFO Environment variable EBVARSCALAPACK_LIB_DIR set to /gpfs01/sw/eb20161117/software/ScaLAPACK/2.0.2-gompi-2014b-OpenBLAS-0.2.9-LAPACK-3.5.0/lib (previously undefined) == 2016-12-01 09:31:18,019 environment.py:97 INFO Environment variable SCALAPACK_MT_STATIC_LIBS set to libscalapack.a,libopenblas.a,libgfortran.a,libpthread.a (previously undefined) == 2016-12-01 09:31:18,020 environment.py:97 INFO Environment variable EBVARSCALAPACK_MT_STATIC_LIBS set to libscalapack.a,libopenblas.a,libgfortran.a,libpthread.a (previously undefined) == 2016-12-01 09:31:18,020 environment.py:97 INFO Environment variable SCALAPACK_STATIC_LIBS set to libscalapack.a,libopenblas.a,libgfortran.a (previously undefined) == 2016-12-01 09:31:18,020 environment.py:97 INFO Environment variable EBVARSCALAPACK_STATIC_LIBS set to libscalapack.a,libopenblas.a,libgfortran.a (previously undefined) == 2016-12-01 09:31:18,020 easyblock.py:1326 INFO Using /tmp/Seaborn/0.7.1/foss-2014b-Python-2.7.12/seaborn-0.7.1/ as start dir == 2016-12-01 09:31:18,021 filetools.py:229 INFO Command python found at /gpfs01/sw/eb20161117/software/Python/2.7.12-foss-2014b/bin/python == 2016-12-01 09:31:18,021 pythonpackage.py:289 INFO Python command being used: /gpfs01/sw/eb20161117/software/Python/2.7.12-foss-2014b/bin/python == 2016-12-01 09:31:18,128 build_log.py:220 INFO configuring... == 2016-12-01 09:31:18,129 easyblock.py:2266 INFO Starting configure step == 2016-12-01 09:31:18,129 easyblock.py:2269 INFO Running method configure_step part of step configure == 2016-12-01 09:31:18,211 environment.py:97 INFO Environment variable PYTHONNOUSERSITE set to 1 (previously undefined) == 2016-12-01 09:31:18,262 build_log.py:220 INFO building... == 2016-12-01 09:31:18,262 easyblock.py:2266 INFO Starting build step == 2016-12-01 09:31:18,263 easyblock.py:2269 INFO Running method build_step part of step build == 2016-12-01 09:31:18,589 run.py:443 INFO cmd " /gpfs01/sw/eb20161117/software/Python/2.7.12-foss-2014b/bin/python setup.py build " exited with exitcode 0 and output: running build running build_py creating build creating build/lib creating build/lib/seaborn copying seaborn/linearmodels.py -> build/lib/seaborn copying seaborn/utils.py -> build/lib/seaborn copying seaborn/apionly.py -> build/lib/seaborn copying seaborn/miscplot.py -> build/lib/seaborn copying seaborn/xkcd_rgb.py -> build/lib/seaborn copying seaborn/crayons.py -> build/lib/seaborn copying seaborn/widgets.py -> build/lib/seaborn copying seaborn/distributions.py -> build/lib/seaborn copying seaborn/__init__.py -> build/lib/seaborn copying seaborn/rcmod.py -> build/lib/seaborn copying seaborn/palettes.py -> build/lib/seaborn copying seaborn/algorithms.py -> build/lib/seaborn copying seaborn/matrix.py -> build/lib/seaborn copying seaborn/categorical.py -> build/lib/seaborn copying seaborn/axisgrid.py -> build/lib/seaborn copying seaborn/timeseries.py -> build/lib/seaborn creating build/lib/seaborn/external copying seaborn/external/six.py -> build/lib/seaborn/external copying seaborn/external/__init__.py -> build/lib/seaborn/external copying seaborn/external/husl.py -> build/lib/seaborn/external creating build/lib/seaborn/tests copying seaborn/tests/test_matrix.py -> build/lib/seaborn/tests copying seaborn/tests/test_categorical.py -> build/lib/seaborn/tests copying seaborn/tests/test_axisgrid.py -> build/lib/seaborn/tests copying seaborn/tests/__init__.py -> build/lib/seaborn/tests copying seaborn/tests/test_miscplot.py -> build/lib/seaborn/tests copying seaborn/tests/test_distributions.py -> build/lib/seaborn/tests copying seaborn/tests/test_utils.py -> build/lib/seaborn/tests copying seaborn/tests/test_algorithms.py -> build/lib/seaborn/tests copying seaborn/tests/test_linearmodels.py -> build/lib/seaborn/tests copying seaborn/tests/test_palettes.py -> build/lib/seaborn/tests copying seaborn/tests/test_rcmod.py -> build/lib/seaborn/tests == 2016-12-01 09:31:18,590 build_log.py:220 INFO testing... == 2016-12-01 09:31:18,590 easyblock.py:2266 INFO Starting test step == 2016-12-01 09:31:18,591 easyblock.py:2269 INFO Running method test_step part of step test == 2016-12-01 09:31:18,591 build_log.py:220 INFO installing... == 2016-12-01 09:31:18,592 easyblock.py:2266 INFO Starting install step == 2016-12-01 09:31:18,592 easyblock.py:2269 INFO Running method stage_install_step part of step install == 2016-12-01 09:31:18,592 easyblock.py:2269 INFO Running method make_installdir part of step install == 2016-12-01 09:31:18,593 easyblock.py:817 INFO Found old directory /gpfs01/sw/eb20161117/software/Seaborn/0.7.1-foss-2014b-Python-2.7.12 == 2016-12-01 09:31:19,332 filetools.py:1058 INFO Path /gpfs01/sw/eb20161117/software/Seaborn/0.7.1-foss-2014b-Python-2.7.12 successfully removed. == 2016-12-01 09:31:19,332 easyblock.py:824 INFO Removed old directory /gpfs01/sw/eb20161117/software/Seaborn/0.7.1-foss-2014b-Python-2.7.12 == 2016-12-01 09:31:19,332 filetools.py:953 INFO Creating directory /gpfs01/sw/eb20161117/software/Seaborn/0.7.1-foss-2014b-Python-2.7.12 (parents: True, set_gid: False, sticky: False) == 2016-12-01 09:31:19,333 easyblock.py:2269 INFO Running method install_step part of step install == 2016-12-01 09:31:19,333 filetools.py:953 INFO Creating directory /gpfs01/sw/eb20161117/software/Seaborn/0.7.1-foss-2014b-Python-2.7.12/lib/python2.7/site-packages (parents: True, set_gid: False, sticky: False) == 2016-12-01 09:31:19,334 environment.py:97 INFO Environment variable PYTHONPATH set to /gpfs01/sw/eb20161117/software/Seaborn/0.7.1-foss-2014b-Python-2.7.12/lib/python2.7/site-packages (previously undefined) == 2016-12-01 09:47:09,905 easyblock.py:2498 WARNING build failed (first 300 chars): cmd " /gpfs01/sw/eb20161117/software/Python/2.7.12-foss-2014b/bin/python setup.py install --prefix=/gpfs01/sw/eb20161117/software/Seaborn/0.7.1-foss-2014b-Python-2.7.12 " exited with exitcode 1 and output: running install running bdist_egg running egg_info creating seaborn.egg-info writing requireme == 2016-12-01 09:47:09,905 easyblock.py:276 INFO Closing log for application name Seaborn version 0.7.1
