Hi Shahzeb,
On 21/03/2017 13:59, Siddiqui, Shahzeb wrote:
Hello,
I would like to find out if you know how to make sure imkl does a
clean build. I am doing repetitive builds and sometimes I keep running
into this issue where imkl fails at sanity check because it fails to
clean up the directory. My tmp directory is set to
/hpc/grid/scratch/easybuild. In this directory, imkl would write its
log for all its build.
It is highly recommended to use a local directory as temporary directory
in EasyBuild, see also
https://github.com/hpcugent/easybuild-easyconfigs/issues/3375 .
regards,
Kenneth
failed (first 300 chars): Cleaning up intel dir
/hpc/grid/scratch/easybuild/hpcswadm/easybuild_intel failed: [Errno
39] Directory not empty:
'/hpc/grid/scratch/easybuild/hpcswadm/easybuild_intel/ism/rm'")
l/2017.1.132...
== fetching files...
== creating build dir, resetting environment...
== unpacking...
== patching...
== preparing...
== configuring...
== building...
== testing...
== installing...
== taking care of extensions...
== postprocessing...
== sanity checking...
== cleaning up...
== FAILED: Installation ended unsuccessfully (build directory:
/nfs/grid/software/RHEL7-BUILD/easybuild/build/imkl/2017.1.132/iimpi-2017.01-GCC-5.4.0-2.27):
build failed (first 300 chars): Cleaning up intel dir
/hpc/grid/scratch/easybuild/hpcswadm/easybuild_intel failed: [Errno
39] Directory not empty:
'/hpc/grid/scratch/easybuild/hpcswadm/easybuild_intel/ism/rm'
== Results of the build can be found in the log file(s)
/hpc/grid/scratch/easybuild/eb-yIih_R/easybuild-imkl-2017.1.132-20170321.005413.TJszC.log
[hpcswadm@amrndhl1157 easybuild]$ tail
/hpc/grid/scratch/easybuild/eb-yIih_R/easybuild-imkl-2017.1.132-20170321.005413.TJszC.log
== 2017-03-21 01:49:56,556 environment.py:97 INFO Environment variable
EBVARI_MPI_CC set to icc (previously undefined)
== 2017-03-21 01:49:56,558 environment.py:97 INFO Environment variable
CFLAGS set to -fPIC (previously undefined)
== 2017-03-21 01:49:56,560 environment.py:97 INFO Environment variable
EBVARI_MPI_F77 set to ifort (previously undefined)
== 2017-03-21 01:49:56,562 environment.py:97 INFO Environment variable
LOCAL_INSTALL_VERBOSE set to 1 (previously undefined)
== 2017-03-21 01:49:56,564 build_log.py:216 INFO cleaning up...
== 2017-03-21 01:49:56,566 easyblock.py:2288 INFO Starting cleanup step
== 2017-03-21 01:49:56,568 easyblock.py:2291 INFO Running method
cleanup_step part of step cleanup
== 2017-03-21 01:49:56,856 build_log.py:147 ERROR EasyBuild crashed
with an error (at
easybuild/software/EasyBuild/3.1.1/lib/python2.7/site-packages/vsc_base-2.5.7-py2.7.egg/vsc/utils/exceptions.py:124
in __init__): Cleaning up intel dir
/hpc/grid/scratch/easybuild/hpcswadm/easybuild_intel failed: [Errno
39] Directory not empty:
'/hpc/grid/scratch/easybuild/hpcswadm/easybuild_intel/ism/rm' (at
easybuild/software/EasyBuild/3.1.1/lib/python2.7/site-packages/easybuild_easyblocks-3.1.1-py2.7.egg/easybuild/easyblocks/generic/intelbase.py:171
in clean_home_subdir)
== 2017-03-21 01:49:56,858 easyblock.py:2520 WARNING build failed
(first 300 chars): Cleaning up intel dir
/hpc/grid/scratch/easybuild/hpcswadm/easybuild_intel failed: [Errno
39] Directory not empty:
'/hpc/grid/scratch/easybuild/hpcswadm/easybuild_intel/ism/rm'
== 2017-03-21 01:49:56,861 easyblock.py:276 INFO Closing log for
application name imkl version 2017.1.132
[hpcswadm@amrndhl1157 easybuild]$ tail -n 20
/hpc/grid/scratch/easybuild/eb-yIih_R/easybuild-imkl-2017.1.132-20170321.005413.TJszC.log
== 2017-03-21 01:49:56,536 environment.py:97 INFO Environment variable
LDFLAGS set to
-L/nfs/grid/software/testing/RHEL7/easybuild/software/Core/icc/2017.1.132-GCC-5.4.0-2.27/lib/intel64
(previously undefined)
== 2017-03-21 01:49:56,539 environment.py:97 INFO Environment variable
I_MPI_CXX set to icpc (previously undefined)
== 2017-03-21 01:49:56,541 environment.py:97 INFO Environment variable
_ModuleTable004_ set to
ZHVsZXMvYWxsL0NvcmUvaWNjLy4yMDE3LjEuMTMyLUdDQy01LjQuMC0yLjI3Lmx1YSIsWyJkZWZhdWx0Il09MCxbImZ1bGxOYW1lIl09ImljYy8uMjAxNy4xLjEzMi1HQ0MtNS40LjAtMi4yNyIsWyJsb2FkT3JkZXIiXT0yLHByb3BUPXt9LFsic2hvcnQiXT0iaWNjIixbInN0YXR1cyJdPSJhY3RpdmUiLH0saWZvcnQ9e1siRk4iXT0iL25mcy9ncmlkL3NvZnR3YXJlL3Rlc3RpbmcvUkhFTDcvZWFzeWJ1aWxkL21vZHVsZXMvYWxsL0NvcmUvaWZvcnQvLjIwMTcuMS4xMzItR0NDLTUuNC4wLTIuMjcubHVhIixbImRlZmF1bHQiXT0wLFsiZnVsbE5hbWUiXT0iaWZvcnQvLjIwMTcuMS4xMzItR0NDLTUuNC4wLTIuMjciLFsibG9hZE9yZGVyIl09NSxwcm9wVD17fSxbInNob3J0Il09
(previous value:
'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')
== 2017-03-21 01:49:56,543 environment.py:97 INFO Environment variable
EBVARMPICC set to mpiicc (previously undefined)
== 2017-03-21 01:49:56,545 environment.py:97 INFO Environment variable
I_MPI_FC set to ifort (previously undefined)
== 2017-03-21 01:49:56,547 environment.py:97 INFO Environment variable
VERBOSE_MODE set to 1 (previously undefined)
== 2017-03-21 01:49:56,549 environment.py:97 INFO Environment variable
OPTFLAGS set to -O2 -xHost (previously undefined)
== 2017-03-21 01:49:56,551 environment.py:97 INFO Environment variable
EBVARLDFLAGS set to
-L/nfs/grid/software/testing/RHEL7/easybuild/software/Core/icc/2017.1.132-GCC-5.4.0-2.27/lib/intel64
(previously undefined)
== 2017-03-21 01:49:56,553 environment.py:97 INFO Environment variable
MPIF77 set to mpiifort (previously undefined)
== 2017-03-21 01:49:56,555 environment.py:97 INFO Environment variable
EBVARCFLAGS set to -O2 -xHost -ftz -fp-speculation=safe -fp-model
source (previously undefined)
== 2017-03-21 01:49:56,556 environment.py:97 INFO Environment variable
EBVARI_MPI_CC set to icc (previously undefined)
== 2017-03-21 01:49:56,558 environment.py:97 INFO Environment variable
CFLAGS set to -fPIC (previously undefined)
== 2017-03-21 01:49:56,560 environment.py:97 INFO Environment variable
EBVARI_MPI_F77 set to ifort (previously undefined)
== 2017-03-21 01:49:56,562 environment.py:97 INFO Environment variable
LOCAL_INSTALL_VERBOSE set to 1 (previously undefined)
== 2017-03-21 01:49:56,564 build_log.py:216 INFO cleaning up...
== 2017-03-21 01:49:56,566 easyblock.py:2288 INFO Starting cleanup step
== 2017-03-21 01:49:56,568 easyblock.py:2291 INFO Running method
cleanup_step part of step cleanup
== 2017-03-21 01:49:56,856 build_log.py:147 ERROR EasyBuild crashed
with an error (at
easybuild/software/EasyBuild/3.1.1/lib/python2.7/site-packages/vsc_base-2.5.7-py2.7.egg/vsc/utils/exceptions.py:124
in __init__): Cleaning up intel dir
/hpc/grid/scratch/easybuild/hpcswadm/easybuild_intel failed: [Errno
39] Directory not empty:
'/hpc/grid/scratch/easybuild/hpcswadm/easybuild_intel/ism/rm' (at
easybuild/software/EasyBuild/3.1.1/lib/python2.7/site-packages/easybuild_easyblocks-3.1.1-py2.7.egg/easybuild/easyblocks/generic/intelbase.py:171
in clean_home_subdir)
== 2017-03-21 01:49:56,858 easyblock.py:2520 WARNING build failed
(first 300 chars): Cleaning up intel dir
/hpc/grid/scratch/easybuild/hpcswadm/easybuild_intel failed: [Errno
39] Directory not empty:
'/hpc/grid/scratch/easybuild/hpcswadm/easybuild_intel/ism/rm'
== 2017-03-21 01:49:56,861 easyblock.py:276 INFO Closing log for
application name imkl version 2017.1.132
Shahzeb Siddiqui
HPC Linux Engineer
B2220-447.2
Groton, CT
