The build for HDF5-1.8.17-foss-2016b has been complete, the build failed at the same place when I disabled LSF from OpenMPI.
Please see the results @ https://github.com/hpcugent/easybuild-easyconfigs/issues/4377 -----Original Message----- From: easybuild-requ...@lists.ugent.be [mailto:easybuild-requ...@lists.ugent.be] On Behalf Of Åke Sandgren Sent: Friday, March 31, 2017 8:37 AM To: easybuild@lists.ugent.be Subject: Re: [easybuild] HDF5 build issue with lsf library libbat.so My point is that if libbat needs symbols from libm.so then the build/installation of it is broken and shoulds be fixed. It has nothing to do with HDF5 or anything else. Shared libraries are supposed to depend on all libraries they need, which in this case is -lm You should point this out to the person responsible for the libbat.so installation! On 03/31/2017 02:09 PM, Siddiqui, Shahzeb wrote: > I have tried to pass LIBS="-lm" and LDFLAGS="-lm" as part of buildopts and it > did not work. The library libbat.so is something that comes from LSF, I am > not responsible for installing LSF and I don't expect LSF should be > reconfigured just for sake of building HDF5. By the way, HDF5 was building > correctly in a non-LSF environment, it only caused an issue when I am > building software on a production system. In our VM, we don't have LSF > configured as part of startup process so I had no means to configure OpenMPI > with LSF. I let all my builds proceed normally while keeping in mind, that I > would rebuild on a production machine with LSF support. > > The error appeared when I tried to rebuild HDF5. > > I am going to try to build HDF5-1.8.17 -foss-2016b and all its dependency > strickly from EB to see if the issue is an OpenMPI or HDF5 issue. -- Ake Sandgren, HPC2N, Umea University, S-90187 Umea, Sweden Internet: a...@hpc2n.umu.se Phone: +46 90 7866134 Fax: +46 90-580 14 Mobile: +46 70 7716134 WWW: http://www.hpc2n.umu.se
