Hi Maik, Can you explain that a little more? Why are you using '--module-only', are you re-using the CentOS 6 installation and creating a new module tree somewhere else? The guesses (I think) lead to the envvars being set in the module only if the something exists in the target, maybe send a debug log to see if these guesses are getting things wrong. It'll also be interesting to see what is being checked in the sanity check step that this passes but still generates an empty module.
Alan On Mon, 11 Jun 2018 at 12:11, Maik Schmidt <[email protected]<mailto:[email protected]>> wrote: Hm, could this be related to having used --module-only? I found this: https://github.com/easybuilders/easybuild-framework/issues/1877 but the environment variables in GCCcore are not mentioned there. So I guess this should have worked? Best, Maik Am 11.06.2018 um 10:41 schrieb Maik Schmidt: > Hi all, > > we're finally upgrading from RHEL6 to 7 and so I wanted to do fresh > builds of most of our software using EasyBuild. Now, when trying to > use the TensorFlow that I have built using the foss-toolchain, I got > the error: > > ImportError: /usr/lib64/libstdc++.so.6: version `GLIBCXX_3.4.21' not > found (required by > /sw/installed/TensorFlow/1.8.0-foss-2018a-Python-3.6.4/lib/python3.6/site-packages/tensorflow/python/_pywrap_tensorflow_internal.so) > > Apparently, it still uses the libstdc++.so from /usr instead of the > one from the GCCcore module. I have looked at the module file, and to > my surprise, I did not see it setting any environment variables like > LD_LIBRARY_PATH at all. > > This cannot be intentional, right? It does not even set things like > PATH or MANPATH, so a: > > $ module load GCC > $ which gcc > /usr/bin/gcc > > still points to /usr, too. I've seen that in the gcc easyblock, there > is the function "make_module_req_guess" that looks like it is supposed > to handle those environment variables, but apparently, thoses > "guesses" are not used anywhere. At least it doesn't end up in the > module file for me... What am I missing here? Is this a bug? > > Best, > > Maik > -- Maik Schmidt HPC Services Technische Universität Dresden Zentrum für Informationsdienste und Hochleistungsrechnen (ZIH) Willers-Bau A116 D-01062 Dresden Telefon: +49 351 463-32836 -- Dr. Alan O'Cais E-CAM Software Manager Juelich Supercomputing Centre Forschungszentrum Juelich GmbH 52425 Juelich, Germany Phone: +49 2461 61 5213 Fax: +49 2461 61 6656 E-mail: [email protected]<mailto:[email protected]> WWW: http://www.fz-juelich.de/ias/jsc/EN ------------------------------------------------------------------------------------------------ ------------------------------------------------------------------------------------------------ Forschungszentrum Juelich GmbH 52425 Juelich Sitz der Gesellschaft: Juelich Eingetragen im Handelsregister des Amtsgerichts Dueren Nr. HR B 3498 Vorsitzender des Aufsichtsrats: MinDir Dr. Karl Eugen Huthmacher Geschaeftsfuehrung: Prof. Dr.-Ing. Wolfgang Marquardt (Vorsitzender), Karsten Beneke (stellv. Vorsitzender), Prof. Dr.-Ing. Harald Bolt, Prof. Dr. Sebastian M. Schmidt ------------------------------------------------------------------------------------------------ ------------------------------------------------------------------------------------------------
