Jakob, We saw that without the versions included several RHEL/centOS 7-provided softwares would break. See https://lists.ugent.be/wws/arc/easybuild/2017-05/msg00081.html as the fist time this was discussed as far as I know.
Cheers, Ben On Thu, Oct 18, 2018 at 10:10 AM Jakob Schiøtz <[email protected]> wrote: > Thanks, > > It is undoubtedly the same problem, in this case it is CentOS 7.4 not > CentOS 6. > > Is there a reason that --enable-ld-version-script was added to the LibTIFF > build? It seems to break compiling with Intel toolchains, maybe it should > be removed, maybe the build should again be split in a foss and an intel > version. > > /Jakob > > > On 18 Oct 2018, at 14:55, Miguel Costa <[email protected]> > wrote: > > > > Dear Jakob, > > > > issue https://github.com/easybuilders/easybuild-easyconfigs/issues/6953 > may be relevant. > > > > In that case, building LibTIFF without --enable-ld-version-script solved > the problem. > > > > Miguel > > > > On Thu, Oct 18, 2018 at 7:17 PM Jakob Schiøtz <[email protected]> > wrote: > > Hi, > > > > I am trying to make easyconfigs for scikit-image and Pillow with > intel/2018b. For previous versions, the foss and intel easyconfigs are > identical (a part from the toolchain), so I just copied the foss version > and tried it. > > > > Compiling Pillow fails with this error: > > > > icc -shared > -L/home/modules/software/icc/2018.3.222-GCC-7.3.0-2.30/lib/intel64 > -L/home/modules/software/imkl/2018.3.222-iimpi-2018b/lib [ ... lots of -L > elided ... ] -ljpeg -lz -ltiff -lpython3.6m -o > build/lib.linux-x86_64-3.6/PIL/_imaging.cpython-36m-x86_64-linux-gnu.so > > > > /home/niflheim/schiotz/easybuild_experimental/sandybridge/software/LibTIFF/4.0.9-GCCcore-7.3.0/lib/libtiff.so:(*IND*+0x0): > multiple definition of `_end' > > > > /home/niflheim/schiotz/easybuild_experimental/sandybridge/software/LibTIFF/4.0.9-GCCcore-7.3.0/lib/libtiff.so:(*IND*+0x0): > multiple definition of `_edata' > > > > /home/niflheim/schiotz/easybuild_experimental/sandybridge/software/LibTIFF/4.0.9-GCCcore-7.3.0/lib/libtiff.so:(*IND*+0x0): > multiple definition of `__bss_start' > > error: command 'icc' failed with exit status 1 > > > > It looks like something is wrong with the LibTIFF installation, which > was built as a prerequisite. I cannot help noticing that with the 2018b > toolchains it has been moved to the GCCcore-7.3.0 toolchain instead of > intel/foss 2017b for the previous versions. Could that have any influence > on this problem? > > > > And can anyone suggest a solution? > > > > Best regards > > > > Jakob > > > > -- > > Jakob Schiøtz, professor, Ph.D. > > Department of Physics > > Technical University of Denmark > > DK-2800 Kongens Lyngby, Denmark > > http://www.fysik.dtu.dk/~schiotz/ > > > > > > > > -- > Jakob Schiøtz, professor, Ph.D. > Department of Physics > Technical University of Denmark > DK-2800 Kongens Lyngby, Denmark > http://www.fysik.dtu.dk/~schiotz/ > > > >
