The message `installing to /home/jfdey/R/minqa/libs` in your output
seems a bit strange.
Do you have anything (silly) in your ~/.Renviron or ~/.Rprofile?
If I remember correctly, R is a bit annoying in that it honors flags and
directories specified in those files, which has broken my builds in the
past and are also somewhat documented at
https://github.com/easybuilders/easybuild-easyblocks/issues/867 .
The `[1] "hello"` part almost looks like the output from shell job
control, but how that'd sneak in, heaven knows.
I set up a 14.04 container and installed R/3.5.3 foss/2018b from a PR,
got past minqa with flying colours.
That one said `installing to
/home/zao/slask/eb-1404/software/R/3.5.3-foss-2018b/lib/R/library/minqa/libs`.
// Lars
On 2019-03-29 23:17, Dey, John F wrote:
I always install by using --install-latest-eb-release
After sending this issue I upgrade Python to 2.7.16 on our 14.04 build machine,
and re-installed 3.81. Same results. I have no issue with same setup on Ubuntu
18.04
John Dey
On 3/29/19, 3:05 PM, "Kenneth Hoste" <kenneth.ho...@ugent.be> wrote:
On 29/03/2019 21:24, Dey, John F wrote:
> I have put my issue into a Gist. This issue is occurring while building
> R extensions.
>
>
https://urldefense.proofpoint.com/v2/url?u=https-3A__gist.github.com_fizwit_51f41001d5bb58a3525b5f58d84a7606&d=DwIDaQ&c=eRAMFD45gAfqt84VtBcfhQ&r=3TR-iteG1SyRqQ5yubQg-_2KIAToz9bj5dZrRdW36Hc&m=Qx9xK3MqqUx8uKrgUVDD4CinnEVJZB7Y0-pdU3notig&s=b1J8DqAItrUzVFPc4EbLD_Gk3c0tCPVoEglu3JPO6EM&e=
That's positively weird, indeed... Pretty sure it's not EasyBuild itself
doing this. Is this a vanilla EasyBuild 3.8.1, or was there some editing
done to it?
Anything in your environment that may explain this?
env | grep hello
regards,
Kenneth
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