Dear Kenneth, Kenneth Hoste <kenneth.ho...@ugent.be> writes:
[snip (94 lines)] > If you're not using PythonBundle to install this bundle of Python packages > (you > should be if you're not), then you have to ensure that the generated module > file > updates $PYTHONPATH... > > You can do so using: > > modextrapaths = {'PYTHONPATH': 'lib/python%(pyshortver)s/site-packages'} > > in the easyconfig file (or by using PythonBundle which does it for you). > > > We need better documentation on writing easyconfig files for (bundles of) > Python > packages, I hope to get to that soon... OK, thanks for the help. I have switched from Bundle to PythonBundle and now get the error: == 2019-04-04 15:11:23,717 run.py:192 INFO running cmd: export PYTHONPATH=/tmp/eb-6Ofbuc/tmp8kccPT/lib/python2.7/site-packages:$PYTHONPATH &&cd .. && /trinity/shared/easybuild/software/Python/2.7.15-foss-2018b/bin/python -c 'import numpy; import scipy; scipy.test(verbose=2)' == 2019-04-04 15:11:23,952 build_log.py:162 ERROR EasyBuild crashed with an error (at easybuild/software/EasyBuild/3.8.1/lib/python2.7/site-packages/vsc_base-2.8.3-py2.7.egg/vsc/utils/exceptions.py:124 in __init__): cmd "export PYTHONPATH=/tmp/eb-6Ofbuc/tmp8kccPT/lib/python2.7/site-packages:$PYTHONPATH &&cd .. && /trinity/shared/easybuild/software/Python/2.7.15-foss-2018b/bin/python -c 'import numpy; import scipy; scipy.test(verbose=2)'" exited with exit code 1 and output: Traceback (most recent call last): File "<string>", line 1, in <module> File "/tmp/eb-6Ofbuc/tmp8kccPT/lib/python2.7/site-packages/scipy-1.1.0-py2.7-linux-x86_64.egg/scipy/_lib/_testutils.py", line 31, in __call__ import pytest ImportError: No module named pytest I would assume this is just a dependency that I need to add to the list of extensions, but when I mistakenly installed a whole Python along with the extensions, I didn't see this error. Is scipy.test part of some selftest within scipy, or is it something EasyBuild is initiating? Cheers, Loris -- Dr. Loris Bennett (Mr.) ZEDAT, Freie Universität Berlin Email loris.benn...@fu-berlin.de