Thank you . I will try that. On May 10, 2019 8:41 PM, "Kenneth Hoste" <kenneth.ho...@ugent.be> wrote:
> Dear Sona, > > On 10/05/2019 09:00, Ms. Sona CP wrote: > >> Hi All, >> I am getting an gcc error while installing lxml of python version 2.7 and >> 3.6.6. Both are showing same error. >> > > Sometimes an ICE (internal compiler error) can happen because of memory > limits, so maybe try this in an environment that is a bit more generous > w.r.t. available memory? > Also check if setting "ulimit -s unlimited" helps at all. > > > regards, > > Kenneth > > eb lxml-4.2.5-foss-2018b-Python-2.7.15.eb -dr >> == temporary log file in case of crash /tmp/jobs/snow/7052/eb-Lbjbnl/ >> easybuild-s4Wtql.log >> == resolving dependencies ... >> == processing EasyBuild easyconfig /sNow/easybuild/software/EasyB >> uild/3.9.0/lib/python2.7/site-packages/easybuild_easyconfigs >> -3.9.0-py2.7.egg/easybuild/easyconfigs/l/lxml/lxml-4.2.5- >> foss-2018b-Python-2.7.15.eb >> == building and installing lxml/4.2.5-foss-2018b-Python-2.7.15... >> == fetching files... >> == creating build dir, resetting environment... >> == unpacking... >> == patching... >> == preparing... >> == configuring... >> == building... >> == testing... >> == installing... >> == FAILED: Installation ended unsuccessfully (build directory: >> /sNow/easybuild/centos/7.3.1611/Broadwell/build/lxml/4.2.5/foss-2018b-Python-2.7.15): >> build failed (first 300 chars): cmd " pip install >> --prefix=/sNow/easybuild/centos/7.3.1611/Broadwell/software/ >> lxml/4.2.5-foss-2018b-Python-2.7.15 --no-deps --ignore-installed >> --no-build-isolation ." exited with exit code 1 and output: >> Processing /sNow/easybuild/centos/7.3.1611/Broadwell/build/lxml/4.2.5/ >> foss-2018b-Python-2.7.1 >> == Results of the build can be found in the log file(s) >> /sNow/easybuild/tmp/easybuild-lxml-4.2.5-20190510.025351.rnflr.log >> ERROR: Build of /sNow/easybuild/software/EasyB >> uild/3.9.0/lib/python2.7/site-packages/easybuild_easyconfigs >> -3.9.0-py2.7.egg/easybuild/easyconfigs/l/lxml/lxml-4.2.5-foss-2018b-Python-2.7.15.eb >> failed (err: 'build failed (first 300 chars): cmd " pip install >> --prefix=/sNow/easybuild/centos/7.3.1611/Broadwell/software/ >> lxml/4.2.5-foss-2018b-Python-2.7.15 --no-deps --ignore-installed >> --no-build-isolation ." exited with exit code 1 and output:\nProcessing >> /sNow/easybuild/centos/7.3.1611/Broadwell/build/lxml/4.2.5/ >> foss-2018b-Python-2.7.1') >> >> Log details are given below >> >> sources/xsl/iso-schematron-xslt1 >> copying >> src/lxml/isoschematron/resources/xsl/iso-schematron-xslt1/readme.txt >> -> build/lib.linux-x86_64-2.7/lxml/isoschematron/resources/xsl/ >> iso-schematron-xslt1 >> running build_ext >> building 'lxml.etree' extension >> creating build/temp.linux-x86_64-2.7 >> creating build/temp.linux-x86_64-2.7/src >> creating build/temp.linux-x86_64-2.7/src/lxml >> gcc -DNDEBUG -g -fwrapv -O3 -Wall -Wstrict-prototypes -O2 >> -ftree-vectorize -march=native -fno-math-errno >> -I/sNow/easybuild/centos/7.3.1611/Broadwell/software/OpenBLAS/0.3.1-GCC-7.3.0-2.30/include >> -I/sNow/easybuild/centos/7.3.1611/Broadwell/software/ScaLAPA >> CK/2.0.2-gompi-2018b-OpenBLAS-0.3.1/include >> -I/sNow/easybuild/centos/7.3.1611/Broadwell/software/FFTW/3.3.8-gompi-2018b/include >> -I/sNow/easybuild/centos/7.3.1611/Broadwell/software/Python/2.7.15-foss-2018b/include >> -I/sNow/easybuild/centos/7.3.1611/Broadwell/software/libxml2/2.9.8-GCCcore-7.3.0/include >> -I/sNow/easybuild/centos/7.3.1611/Broadwell/software/libxslt/1.1.32-GCCcore-7.3.0/include >> -fPIC -DCYTHON_CLINE_IN_TRACEBACK=0 -I/sNow/easybuild/centos/7.3.1 >> 611/Broadwell/software/libxslt/1.1.32-GCCcore-7.3.0/include >> -I/sNow/easybuild/centos/7.3.1611/Broadwell/software/libxml2 >> /2.9.8-GCCcore-7.3.0/include/libxml2 -Isrc -Isrc/lxml/includes >> -I/sNow/easybuild/centos/7.3.1611/Broadwell/software/Python/ >> 2.7.15-foss-2018b/include/python2.7 -c src/lxml/etree.c -o >> build/temp.linux-x86_64-2.7/src/lxml/etree.o -w >> gcc: internal compiler error: Killed (program cc1) >> Please submit a full bug report, >> with preprocessed source if appropriate. >> See <https://gcc.gnu.org/bugs/> for instructions. >> Compile failed: command 'gcc' failed with exit status 4 >> creating tmp >> creating tmp/jobs >> creating tmp/jobs/snow >> creating tmp/jobs/snow/7052 >> creating tmp/jobs/snow/7052/eb-Lbjbnl >> cc >> -I/sNow/easybuild/centos/7.3.1611/Broadwell/software/libxslt/1.1.32-GCCcore-7.3.0/include >> -I/sNow/easybuild/centos/7.3.1611/Broadwell/software/libxml2 >> /2.9.8-GCCcore-7.3.0/include/libxml2 -I/usr/include/libxml2 -c >> /tmp/jobs/snow/7052/eb-Lbjbnl/xmlXPathInitMacq6q.c -o >> tmp/jobs/snow/7052/eb-Lbjbnl/xmlXPathInitMacq6q.o >> /tmp/jobs/snow/7052/eb-Lbjbnl/xmlXPathInitMacq6q.c:2:1: warning: >> return type defaults to 'int' [-Wimplicit-int] >> main (int argc, char **argv) { >> ^~~~ >> cc tmp/jobs/snow/7052/eb-Lbjbnl/xmlXPathInitMacq6q.o >> -L/sNow/easybuild/centos/7.3.1611/Broadwell/software/libxslt/1.1.32-GCCcore-7.3.0/lib >> -L/sNow/easybuild/centos/7.3.1611/Broadwell/software/libxml2/2.9.8-GCCcore-7.3.0/lib >> -lxml2 -o a.out >> error: command 'gcc' failed with exit status 4 >> >> ---------------------------------------- >> Command >> "/sNow/easybuild/centos/7.3.1611/Broadwell/software/Python/2.7.15-foss-2018b/bin/python >> -u -c "import setuptools, tokenize;__file__='/tmp/jobs/s >> now/7052/eb-Lbjbnl/pip-req-build-oT8D1Q/setup.py';f=getattr(tokenize, >> 'open', open)(__file__);code=f.read().replace('\r\n', >> '\n');f.close();exec(compile(code, __file__, 'exec'))" install --record >> /tmp/jobs/snow/7052/eb-Lbjbnl/pip-record-Yd_lFs/install-record.txt >> --single-version-externally-managed --prefix >> /sNow/easybuild/centos/7.3.1611/Broadwell/software/lxml/4.2.5-foss-2018b-Python-2.7.15 >> --compile" failed with error code 1 in /tmp/jobs/snow/7052/eb-Lbjbnl/ >> pip-req-build-oT8D1Q/ >> You are using pip version 10.0.1, however version 19.1.1 is available. >> You should consider upgrading via the 'pip install --upgrade pip' command. >> (at easybuild/software/EasyBuild/3.9.0/lib/python2.7/site-packag >> es/easybuild_framework-3.9.0-py2.7.egg/easybuild/tools/run.py:501 in >> parse_cmd_output) >> == 2019-05-10 02:54:58,952 easyblock.py:3010 WARNING build failed (first >> 300 chars): cmd " pip install --prefix=/sNow/easybuild/cento >> s/7.3.1611/Broadwell/software/lxml/4.2.5-foss-2018b-Python-2.7.15 >> --no-deps --ignore-installed --no-build-isolation ." exited with exit >> code 1 and output: >> Processing /sNow/easybuild/centos/7.3.1611/Broadwell/build/lxml/4.2.5/ >> foss-2018b-Python-2.7.1 >> == 2019-05-10 02:54:58,952 easyblock.py:293 INFO Closing log for >> application name lxml version 4.2.5 >> >> With Regards, >> Sona >> >> >> >>
