Dear Wolfram, You can add the --configure-vars option to the 'installopts' EB variable. See the already existing easyconfig V8-2.2-foss-2018b-R-3.5.1.eb
Cheers, Sam VUB HPC team On Mon, Aug 12, 2019 at 2:22 PM Wolfram Zieger <wolfram.zieger....@bayer.com> wrote: > Hello, > > Is there the possibility to submit an individual “R CMD INSTALL” command > for a certain R extension? > > > > Background: > > --------------------- > > The R extension “V8” uses hardcoded Paths to the NodeJS “V8” library in > its configure step. However I want it to use the NODEJS environment module > instead. > > This is, how the “configure” script of the R extension “V8” looks: > > > > > ------------------------------------------------------------------------------------------------------------- > > #!/usr/bin/env bash > > # … > > # If your libv8 is installed in a custom location you need to set > > # INCLUDE_DIR and LIB_DIR manually via e.g: > > # R CMD INSTALL --configure-vars='INCLUDE_DIR=/.../include > LIB_DIR=/.../lib' > > # … > > PKG_CFLAGS="-I/usr/include/v8 -I/usr/include/v8-3.14" > > > ------------------------------------------------------------------------------------------------------------- > > > > So indeed, as the comment in the header states, the most promising step > would be to submit a R CMD INSTALL command – i.e. > > R CMD INSTALL --configure-vars='INCLUDE_DIR=/.../include LIB_DIR=/.../lib' > > > > Is there an elegant way to do this for an RPackage (exts_defaultclass = > 'RPackage') ? > > > > Else I’d try to patch the “configure” file from the “V8”-R-extension. > > > > Thank you and best regards, > > Wolfram > > > > > > PS: Thanks Kenneth for pointing out my error in regards to the wrong mail > address – which also lead to the discovery of a further grave error in my > first mail – which now nobody can see any more :) > > > > > > > > Wolfram Zieger > > –––––––––––––– > > Senior Systems Engineer > > IT Services Berlin > > Phone: +49 30 2007 697 -12 > > alt. Phone: +49 211 399 223 -45 > > Fax: +49 30 2007 697 -11 > > w.zie...@atos.net > > science+computing ag/ATOS > > Geschäftsstelle Berlin > > Ordensmeisterstraße 15 > > 12099 Berlin, Germany > > https://de.atos.net/sc > > ___ ___ > > /\ \ /\ \ > > /::\ \ __ /::\ \ > > /:/\:\ \ /\ \ /:/\:\ \ > > _\:\-\:\ \ \:\ \___ /:/ \:\ \ > > /\ \:\ \:\__\ /\___ __\ /:/__/ \:\__\ > > \:\ \:\ \/__/ \/__/\ \_/ \:\ \ \/__/ > > \:\ \:\__\ \:\_\ \:\ \ > > \:\/:/ / \/_/ \:\ \ > > \::/ / \:\__\ > > \/__/ \/__/ > > > > --== science + computing ==-- > > an A T O S company > > >
