Hi Ward, Ward Poelmans <wpoel...@gmail.com> writes:
> Hi Loris, > > On 23/03/2020 13:25, Loris Bennett wrote: >> >> ../lib/.libs/libgretl-1.0.so: error: undefined reference to >> 'omp_get_num_threads' >> ../lib/.libs/libgretl-1.0.so: error: undefined reference to 'GOMP_barrier' >> ../lib/.libs/libgretl-1.0.so: error: undefined reference to >> 'omp_get_thread_num' >> ../lib/.libs/libgretl-1.0.so: error: undefined reference to 'GOMP_parallel' >> ../lib/.libs/libgretl-1.0.so: error: undefined reference to 'omp_get_wtime' >> ../lib/.libs/libgretl-1.0.so: error: undefined reference to >> 'omp_set_num_threads' >> collect2: error: ld returned 1 exit status > > This means the linker is not pulling in `-lgomp`. I guess because > `-fopenmp` is not used? The lines you show here above the errors are > probably unrelated (can happen if you're not using -j1). Thanks for the hint. Here's the part of the log with --parallel=1: libtool: link: (cd ".libs" && rm -f "libgretl-1.0.so.32" && ln -s "libgretl-1.0.so.32.0.0" "libgretl-1.0.so.32") libtool: link: (cd ".libs" && rm -f "libgretl-1.0.so" && ln -s "libgretl-1.0.so.32.0.0" "libgretl-1.0.so") libtool: link: ( cd ".libs" && rm -f "libgretl-1.0.la" && ln -s "../libgretl-1.0.la" "libgretl-1.0.la" ) make[1]: Leaving directory `/trinity/shared/easybuild/build/gretl/2020a/foss-2019a/gretl-2020a/lib' make -C cli make[1]: Entering directory `/trinity/shared/easybuild/build/gretl/2020a/foss-2019a/gretl-2020a/cli' mkdir .deps gcc -c -O2 -ftree-vectorize -march=native -fno-math-errno -fopenmp -I.. -I.. -I../lib/src -I/trinity/shared/easybuild/software/GLib/2.60.1-GCCcore-8.2.0/include/glib-2.0 -I/trinity/shared/easybuild/software/GLib/2.60.1-GCCcore-8.2.0/lib/glib-2.0/include -I/trinity/shared/easybuild/software/PCRE/8.43-GCCcore-8.2.0/include -DLOCALEDIR=\"/trinity/shared/easybuild/software/gretl/2020a-foss-2019a/share/locale\" -DHAVE_CONFIG_H gretlcli.c gcc -O2 -ftree-vectorize -march=native -fno-math-errno -fopenmp -I.. -I.. -I../lib/src -I/trinity/shared/easybuild/software/GLib/2.60.1-GCCcore-8.2.0/include/glib-2.0 -I/trinity/shared/easybuild/software/GLib/2.60.1-GCCcore-8.2.0/lib/glib-2.0/include -I/trinity/shared/easybuild/software/PCRE/8.43-GCCcore-8.2.0/include -DLOCALEDIR=\"/trinity/shared/easybuild/software/gretl/2020a-foss-2019a/share/locale\" -DHAVE_CONFIG_H -MM gretlcli.c > .deps/gretlcli.d gcc -c -O2 -ftree-vectorize -march=native -fno-math-errno -fopenmp -I.. -I.. -I../lib/src -I/trinity/shared/easybuild/software/GLib/2.60.1-GCCcore-8.2.0/include/glib-2.0 -I/trinity/shared/easybuild/software/GLib/2.60.1-GCCcore-8.2.0/lib/glib-2.0/include -I/trinity/shared/easybuild/software/PCRE/8.43-GCCcore-8.2.0/include -DLOCALEDIR=\"/trinity/shared/easybuild/software/gretl/2020a-foss-2019a/share/locale\" -DHAVE_CONFIG_H complete.c gcc -O2 -ftree-vectorize -march=native -fno-math-errno -fopenmp -I.. -I.. -I../lib/src -I/trinity/shared/easybuild/software/GLib/2.60.1-GCCcore-8.2.0/include/glib-2.0 -I/trinity/shared/easybuild/software/GLib/2.60.1-GCCcore-8.2.0/lib/glib-2.0/include -I/trinity/shared/easybuild/software/PCRE/8.43-GCCcore-8.2.0/include -DLOCALEDIR=\"/trinity/shared/easybuild/software/gretl/2020a-foss-2019a/share/locale\" -DHAVE_CONFIG_H -MM complete.c > .deps/complete.d ../libtool --mode=link gcc -mavx -Winline -L/trinity/shared/easybuild/software/MPFR/4.0.2-GCCcore-8.2.0/lib -L/trinity/shared/easybuild/software/ImageMagick/7.0.8-46-GCCcore-8.2.0/lib -L/trinity/shared/easybuild/software/GtkSourceView/3.24.11-GCCcore-8.2.0/lib -L/trinity/shared/easybuild/software/GMP/6.1.2-GCCcore-8.2.0/lib -L/trinity/shared/easybuild/software/libxml2/2.9.8-GCCcore-8.2.0/lib -L/trinity/shared/easybuild/software/FFTW/3.3.8-gompi-2019a/lib -L/trinity/shared/easybuild/software/ScaLAPACK/2.0.2-gompi-2019a-OpenBLAS-0.3.5/lib -L/trinity/shared/easybuild/software/OpenBLAS/0.3.5-GCC-8.2.0-2.31.1/lib -L/trinity/shared/easybuild/software/GCCcore/8.2.0/lib64 -L/trinity/shared/easybuild/software/GCCcore/8.2.0/lib -o gretlcli gretlcli.o complete.o \ ../lib/libgretl-1.0.la -lreadline -lncurses libtool: link: gcc -mavx -Winline -o .libs/gretlcli gretlcli.o complete.o -L/trinity/shared/easybuild/software/MPFR/4.0.2-GCCcore-8.2.0/lib -L/trinity/shared/easybuild/software/ImageMagick/7.0.8-46-GCCcore-8.2.0/lib -L/trinity/shared/easybuild/software/GtkSourceView/3.24.11-GCCcore-8.2.0/lib -L/trinity/shared/easybuild/software/GMP/6.1.2-GCCcore-8.2.0/lib -L/trinity/shared/easybuild/software/libxml2/2.9.8-GCCcore-8.2.0/lib -L/trinity/shared/easybuild/software/FFTW/3.3.8-gompi-2019a/lib -L/trinity/shared/easybuild/software/ScaLAPACK/2.0.2-gompi-2019a-OpenBLAS-0.3.5/lib -L/trinity/shared/easybuild/software/OpenBLAS/0.3.5-GCC-8.2.0-2.31.1/lib -L/trinity/shared/easybuild/software/GCCcore/8.2.0/lib64 -L/trinity/shared/easybuild/software/GCCcore/8.2.0/lib ../lib/.libs/libgretl-1.0.so -L/trinity/shared/easybuild/software/XZ/5.2.4-GCCcore-8.2.0/lib -L/trinity/shared/easybuild/software/zlib/1.2.11-GCCcore-8.2.0/lib -L/trinity/shared/easybuild/software/binutils/2.31.1-GCCcore-8.2.0/lib -L/trinity/shared/easybuild/software/gettext/0.19.8.1/lib -L/trinity/shared/easybuild/software/GLib/2.60.1-GCCcore-8.2.0/lib -lopenblas /trinity/shared/easybuild/software/libxml2/2.9.8-GCCcore-8.2.0/lib/libxml2.so -ldl -lz /trinity/shared/easybuild/software/XZ/5.2.4-GCCcore-8.2.0/lib/liblzma.so -lglib-2.0 /trinity/shared/easybuild/software/GMP/6.1.2-GCCcore-8.2.0/lib/libgmp.so /trinity/shared/easybuild/software/FFTW/3.3.8-gompi-2019a/lib/libfftw3.so -lm -lpthread -lcurl -lrt -lreadline -lncurses -Wl,-rpath -Wl,/trinity/shared/easybuild/software/gretl/2020a-foss-2019a/lib -Wl,-rpath -Wl,/trinity/shared/easybuild/software/libxml2/2.9.8-GCCcore-8.2.0/lib -Wl,-rpath -Wl,/trinity/shared/easybuild/software/XZ/5.2.4-GCCcore-8.2.0/lib -Wl,-rpath -Wl,/trinity/shared/easybuild/software/GMP/6.1.2-GCCcore-8.2.0/lib -Wl,-rpath -Wl,/trinity/shared/easybuild/software/FFTW/3.3.8-gompi-2019a/lib ../lib/.libs/libgretl-1.0.so: error: undefined reference to 'GOMP_barrier' ../lib/.libs/libgretl-1.0.so: error: undefined reference to 'omp_get_wtime' ../lib/.libs/libgretl-1.0.so: error: undefined reference to 'omp_set_num_threads' ../lib/.libs/libgretl-1.0.so: error: undefined reference to 'GOMP_parallel' ../lib/.libs/libgretl-1.0.so: error: undefined reference to 'omp_get_thread_num' ../lib/.libs/libgretl-1.0.so: error: undefined reference to 'omp_get_num_threads' collect2: error: ld returned 1 exit status So the libraries seem to get build OK, but linking the client against them seems to fail, despite the fact that all the calls to 'gcc' seem to have the option '-fopenmp' set. Any ideas? Cheers, Loris -- Dr. Loris Bennett (Mr.) ZEDAT, Freie Universität Berlin Email loris.benn...@fu-berlin.de
