Hi,
In an EC I am writing for Medaka 2.0.1 I have
exts_list = [
('mappy', '2.29', {
'checksums':
['43dda2693c963152ddb5be9eac2b7ea0c943cba9becd79494a9f2b8804039a9a'],
}),
...
However, the installation of this extension fails with:
gcc -fno-strict-overflow -DNDEBUG -g -O3 -Wall -O2 -ftree-vectorize
-march=native -fno-math-errno -fPIC -O2 -ftree-vectorize -march=native
-fno-math-errno -fPIC -O2 -ftree-vectorize -march=native -fno-math-errno -fPIC
-I/trinity/shared/easybuild/software/FFTW/3.3.10-GCC-13.3.0/include
-I/trinity/shared/easybuild/software/FlexiBLAS/3.4.4-GCC-13.3.0/include
-I/trinity/shared/easybuild/software/FlexiBLAS/3.4.4-GCC-13.3.0/include/flexiblas
-fPIC -I.
-I/trinity/shared/easybuild/software/Python/3.12.3-GCCcore-13.3.0/include/python3.12
-c python/mappy.c -o build/temp.linux-x86_64-cpython-312/python/mappy.o
-DHAVE_KALLOC -msse4.1
cc1: fatal error: python/mappy.c: No such file or directory
I assume the missing file is supposed to be generated from
'python/mappy.pyx', which does exist, but for some reason this is not
happening.
Any ideas how to debug the issue?
Cheers,
Loris
--
Dr. Loris Bennett (Herr/Mr)
FUB-IT, Freie Universität Berlin
