I am still having the same issue with Ubuntu 13.10, Gnome Desktop and
Dia 0.97.2. I have fixed it by editing the start script /usr/bin/dia to
have the LIBOVERLAY_SCROLLBAR=0 before the dia launch. /usr/bin/dia is
now as follows:

#!/bin/sh
#
# Wrapped that calls dia in integrated version
#

LIBOVERLAY_SCROLLBAR=0 dia-normal --integrated "$@"

This fixes the issue with the comment boxes as far as I can tell and
still allows launching by calling dia from Alt+F2 or terminal.

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https://bugs.launchpad.net/bugs/1011446

Title:
  UML drawing tools' comment fields are too small to be usable

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