Great, thanks for the help. I did few things and I am not sure which ended 
up wiping the index. I killed the cluster, I upgraded to 1.2.2, I rebooted 
the 2 AWS instances, I indexed on each node separately, then I joined the 
cluster. Things look fine now.

On Tuesday, August 12, 2014 10:46:33 AM UTC-4, Jörg Prante wrote:
>
> There is one node with zen unicast that can not connect. I do not know how 
> to find more about that, it seems an EC2 issue.
>
> Except you are being attacked in vain by the scripting vulnerability, 
> there are only syntax errors in configuration and queries... you should be 
> able to fix that.
>
> Jörg
>  
>
>
> On Tue, Aug 12, 2014 at 4:25 PM, Sam2014 <sabda...@gmail.com <javascript:>
> > wrote:
>
>> Just wondering, will remove/re-install get rid of the stagnant index 
>> since I plan on upgrading from 1.2.1 to 1.2.2?
>>
>>
>> On Tuesday, August 12, 2014 9:42:10 AM UTC-4, Sam2014 wrote:
>>>
>>> The link doesn't work.
>>> I am not sure about the difference, I have always deleted the indices 
>>> the same way, curl -XPUT http... //to create, and curl -XDelete /http:...
>>> I did not create any aliases, I am just using Get _aliases to see whats 
>>> still on the node.
>>> Did the log tell you anything, there are some weird errors in there that 
>>> I don't know how to interpret, a quick look there may tell you something.
>>>
>>> On Tuesday, August 12, 2014 3:04:39 AM UTC-4, Jörg Prante wrote:
>>>>
>>>> So you are wrestling with aliases. You can not delete aliases by file 
>>>> system operations. Have you checked
>>>>
>>>> http://www.elasticsearch.org/guide/en/elasticsearch/
>>>> reference/current/indices-aliases.html#deleting
>>>>
>>>> for deleting aliases?
>>>>
>>>> Jörg
>>>>
>>>>
>>>> On Tue, Aug 12, 2014 at 4:10 AM, Sam2014 <sabda...@gmail.com> wrote:
>>>>
>>>>> ///Attached is the cluster log that covers the whole sequence from 
>>>>> shutting the cluster and re-activating it.
>>>>>
>>>>> //Show me current state of cluster
>>>>> {
>>>>>    "cluster_name": "rexCluster",
>>>>>    "status": "red",
>>>>>    "timed_out": false,
>>>>>    "number_of_nodes": 2,
>>>>>    "number_of_data_nodes": 2,
>>>>>    "active_primary_shards": 7,
>>>>>    "active_shards": 7,
>>>>>    "relocating_shards": 0,
>>>>>    "initializing_shards": 2,
>>>>>    "unassigned_shards": 21
>>>>> }
>>>>>
>>>>> //Show me indices on the cluster
>>>>>
>>>>> GET _aliases
>>>>> {
>>>>>    "foo": {
>>>>>       "aliases": {}
>>>>>    },
>>>>>    "mediregs": {
>>>>>       "aliases": {}
>>>>>    },
>>>>>    "twitter": {
>>>>>       "aliases": {}
>>>>>    }
>>>>> }
>>>>>
>>>>>
>>>>>
>>>>> //Shut down the cluster
>>>>>
>>>>> POST /_cluster/nodes/_shutdown
>>>>> {
>>>>>    "cluster_name": "rexCluster",
>>>>>    "nodes": {
>>>>>       "_vPEfmc9TruIpugk4NWleg": {
>>>>>          "name": "node 1"
>>>>>       },
>>>>>       "DB94rWiiSvS9HUTXwI7GTw": {
>>>>>          "name": "node 2"
>>>>>       }
>>>>>    }
>>>>> }
>>>>>
>>>>>  //Go into the fs and delete files under /data
>>>>>
>>>>> ubuntu@domU-12-31-39-0A-99-EA:/opt/cores/elasticsearch/data/rexCluster/nodes/0$
>>>>>  
>>>>> ls
>>>>>
>>>>> *indices*  node.lock  *_state*
>>>>>
>>>>> ubuntu@domU-12-31-39-0A-99-EA:/opt/cores/elasticsearch/data/rexCluster/nodes/0$
>>>>>  
>>>>> cd indices/
>>>>>
>>>>> ubuntu@domU-12-31-39-0A-99-EA:/opt/cores/elasticsearch/data/rexCluster/nodes/0/indices$
>>>>>  
>>>>> ls
>>>>>
>>>>> *foo*  *mediregs*  *twitter*
>>>>>
>>>>> ubuntu@domU-12-31-39-0A-99-EA:/opt/cores/elasticsearch/data/rexCluster/nodes/0/indices$
>>>>>  
>>>>> sudo rm -rf foo
>>>>>
>>>>> ubuntu@domU-12-31-39-0A-99-EA:/opt/cores/elasticsearch/data/rexCluster/nodes/0/indices$
>>>>>  
>>>>> sudo rm -rf mediregs
>>>>>
>>>>> ubuntu@domU-12-31-39-0A-99-EA:/opt/cores/elasticsearch/data/rexCluster/nodes/0/indices$
>>>>>  
>>>>> sudo rm -rf twitter
>>>>>
>>>>> ubuntu@domU-12-31-39-0A-99-EA:/opt/cores/elasticsearch/data/rexCluster/nodes/0/indices$
>>>>>  
>>>>> ls
>>>>>
>>>>> ubuntu@domU-12-31-39-0A-99-EA:/opt/cores/elasticsearch/data/
>>>>> rexCluster/nodes/0/indices$ 
>>>>>  //Restart nodes 1 &2 - should be in log file
>>>>>
>>>>> Get _aliases //Again - they came back!!
>>>>> {
>>>>>    "foo": {
>>>>>       "aliases": {}
>>>>>    },
>>>>>    "mediregs": {
>>>>>       "aliases": {}
>>>>>    },
>>>>>    "twitter": {
>>>>>       "aliases": {}
>>>>>    }
>>>>> }
>>>>>
>>>>>
>>>>> //Ok - Try to delete index
>>>>> DELETE /mediregs
>>>>>
>>>>> //takes little while and comes back
>>>>> {
>>>>>    "acknowledged": false
>>>>> }
>>>>>
>>>>>
>>>>>
>>>>>
>>>>> On Monday, August 11, 2014 7:12:22 PM UTC-4, Jörg Prante wrote:
>>>>>
>>>>>> Can you post your detailed steps and debug logs?
>>>>>>
>>>>>> Make also sure there is no third node - this looks like ES is 
>>>>>> shipping shards to a third node from which the two nodes are recovering 
>>>>>> from.
>>>>>>
>>>>>> Jörg
>>>>>>
>>>>>>
>>>>>> On Tue, Aug 12, 2014 at 1:06 AM, Sam2014 <sabda...@gmail.com> wrote:
>>>>>>
>>>>>>> I stopped node 1, then I stopped node 2. I disabled the cluster, 
>>>>>>> deleted files from nodes, Made sure no Indices on either node. I 
>>>>>>> re-enabled 
>>>>>>> cluster in yml, restarted cluster, and the index came back!
>>>>>>>
>>>>>>>
>>>>>>> On Monday, August 11, 2014 6:16:42 PM UTC-4, Jörg Prante wrote:
>>>>>>>
>>>>>>>> There is no vicious circle. First you must stop the cluster. Then, 
>>>>>>>> after processes have exited, continue with file operations. After 
>>>>>>>> that, you 
>>>>>>>> can start the cluster nodes again.
>>>>>>>>
>>>>>>>> Jörg
>>>>>>>>
>>>>>>>>
>>>>>>>> On Mon, Aug 11, 2014 at 11:49 PM, Sam2014 <sabda...@gmail.com> 
>>>>>>>> wrote:
>>>>>>>>
>>>>>>>>> Oops, When I restarted the cluster/nodes, I see shards under an 
>>>>>>>>> "unassigned node", neither of the two nodes of the cluster. Is there 
>>>>>>>>> a way 
>>>>>>>>> I can route/assign /delete out of this vicious cycle?
>>>>>>>>>
>>>>>>>>>
>>>>>>>>> On Monday, August 11, 2014 5:46:25 PM UTC-4, Sam2014 wrote:
>>>>>>>>>>
>>>>>>>>>> I also deleted the directory, restarted the nodes, and it 
>>>>>>>>>> recovered the index still, which is null.
>>>>>>>>>>
>>>>>>>>>> On Monday, August 11, 2014 5:42:53 PM UTC-4, Sam2014 wrote:
>>>>>>>>>>>
>>>>>>>>>>> I wish it was that simple, I deleted the directory of the index 
>>>>>>>>>>> from /data. Yet, the index is still there and won't be deleted or 
>>>>>>>>>>> recreated.. I still get acknowledged = false.
>>>>>>>>>>>
>>>>>>>>>>> On Monday, August 11, 2014 5:31:36 PM UTC-4, Jörg Prante wrote:
>>>>>>>>>>>>
>>>>>>>>>>>> Your JVMs (at least one of them) are not able to process the 
>>>>>>>>>>>> command, so you should check out the data directory where the file 
>>>>>>>>>>>> of the 
>>>>>>>>>>>> index to be deleted are located. Shut your cluster down, remove 
>>>>>>>>>>>> the index 
>>>>>>>>>>>> files of the index to be deleted from the filesystem, and start 
>>>>>>>>>>>> the cluster 
>>>>>>>>>>>> up again.
>>>>>>>>>>>>
>>>>>>>>>>>> To avoid such situations, find out why the JVMs could not 
>>>>>>>>>>>> react, most probably there are exceptions in the server logs, and 
>>>>>>>>>>>> fix the 
>>>>>>>>>>>> trouble.
>>>>>>>>>>>>
>>>>>>>>>>>> Jörg
>>>>>>>>>>>>
>>>>>>>>>>>>
>>>>>>>>>>>> On Mon, Aug 11, 2014 at 11:24 PM, Sam2014 <sabda...@gmail.com> 
>>>>>>>>>>>> wrote:
>>>>>>>>>>>>
>>>>>>>>>>>>> I got myself in trouble by changing the mapping.
>>>>>>>>>>>>>
>>>>>>>>>>>>> I am on a cluster of 2 nodes, and trying to delete the index, 
>>>>>>>>>>>>> I keep getting acknowleged = false with normal delete curl -X 
>>>>>>>>>>>>> GET "http://localhost:9200/myIndex
>>>>>>>>>>>>>
>>>>>>>>>>>>> If I look at my index through HEAD plugin, I get 
>>>>>>>>>>>>> "myIndex"
>>>>>>>>>>>>> size: unknown
>>>>>>>>>>>>> docs: unknown
>>>>>>>>>>>>>
>>>>>>>>>>>>> and I see no shards assigned to either node apparently 
>>>>>>>>>>>>> (Everything in this index indicates Null). I would just like to 
>>>>>>>>>>>>> be able to 
>>>>>>>>>>>>> delete it. How can I force a delete?
>>>>>>>>>>>>>
>>>>>>>>>>>>>
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>

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