branch: externals/gnosis
commit 708b74c50db7a97c5e14f0fd83e23c5e0af9f0e7
Author: Thanos Apollo <[email protected]>
Commit: Thanos Apollo <[email protected]>
doc: Remove .info and .text files
* For now support only Guix and GNU ELPA.
---
doc/gnosis.info | 561 --------------------------------------------------------
doc/gnosis.texi | 534 -----------------------------------------------------
2 files changed, 1095 deletions(-)
diff --git a/doc/gnosis.info b/doc/gnosis.info
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-This is gnosis.info, produced by .texi2any-real version 7.1.1 from
-gnosis.texi.
-
-INFO-DIR-SECTION Emacs misc features
-START-INFO-DIR-ENTRY
-* Gnosis: (gnosis). Spaced Repetition System.
-END-INFO-DIR-ENTRY
-
-
-File: gnosis.info, Node: Top, Next: Introduction, Up: (dir)
-
-Gnosis User Manual
-******************
-
-Gnosis is a learning tool designed to enhance memory retention by
-integrating a thema-taking system with spaced repetition and
-self-testing.
-
-This manual is written for Gnosis version 0.5.8, released on 2025-11-08.
-
- • Manual:
- • <https://elpa.nongnu.org/nongnu/doc/gnosis.html>
- • <https://thanosapollo.org/projects/gnosis/> (Mirror)
- • Git repositories:
- • <https://git.thanosapollo.org/gnosis>
- • <https://codeberg.org/thanosapollo/emacs-gnosis> (Mirror)
- •
- <https://git.savannah.gnu.org/cgit/emacs/nongnu.git/?h=elpa/gnosis>
- (Mirror)
-
-* Menu:
-
-* Introduction::
-* Getting started Tutorial::
-* Thema Types::
-* Linking gnosis themata to org-gnosis content::
-* Customization::
-* Gnosis Algorithm::
-* Editing themata::
-* Sync between devices::
-* Interactions with other software::
-* Contributing::
-
--- The Detailed Node Listing --
-
-Getting started Tutorial
-
-* Gnosis Dashboard::
-* Linking Themata to Note Topics::
-
-Thema Types
-
-* Cloze::
-* MCQ::
-
-Cloze
-
-* Default cloze format::
-* Using anki-like syntax::
-
-Customization
-
-* Typos | String Comparison::
-
-Gnosis Algorithm
-
-* Anagnosis Event::
-* Lethe event::
-* Proto::
-
-Interactions with other software
-
-* emacs-no-littering::
-
-Contributing
-
-* How to create a patch::
-
-
-
-File: gnosis.info, Node: Introduction, Next: Getting started Tutorial,
Prev: Top, Up: Top
-
-1 Introduction
-**************
-
-Gnosis consists of a note taking module (‘org-gnosis’) and a self
-testing module.
-
- Users can utilize each Gnosis module independently, but the intended
-workflow begins with writing a note on a specific topic. After
-completing the note, the user creates themata (flashcard-like questions)
-related to the topic.
-
- These themata are then used for spaced repetition reviews utilizing
-the *note Gnosis Algorithm::.
-
-
-File: gnosis.info, Node: Getting started Tutorial, Next: Thema Types, Prev:
Introduction, Up: Top
-
-2 Getting started Tutorial
-**************************
-
-To follow this tutorial, clone the demo deck available at codeberg
-
- Demo Deck: <https://codeberg.org/thanosapollo/gnosis-demo>
-
- Import it to your gnosis collection via ‘M-x gnosis-import-deck’
-
-* Menu:
-
-* Gnosis Dashboard::
-* Linking Themata to Note Topics::
-
-
-File: gnosis.info, Node: Gnosis Dashboard, Next: Linking Themata to Note
Topics, Up: Getting started Tutorial
-
-2.1 Gnosis Dashboard
-====================
-
-The first thing new users should familiarize themselves with is
-‘gnosis-dashboard’, which you can access via ‘M-x gnosis-dashboard’.
-
- You can start a review session from the dashboard by pressing ‘r’ or
-with ‘M-x gnosis-review’.
-
- NOTE: Gnosis supports reviewing specifics topics for notes of
-‘org-gnosis’ with ‘M-x gnosis-review-topic’
-
- You can add new themata from the dashboard ‘a’ or with ‘M-x
-gnosis-add-thema’
-
-
-File: gnosis.info, Node: Linking Themata to Note Topics, Prev: Gnosis
Dashboard, Up: Getting started Tutorial
-
-2.2 Linking Themata to Note Topics
-==================================
-
-We can create a demo note topic for Vancomycin, an antibiotic, with ‘M-x
-org-gnosis-find RET Vancomycin’. For this demo, just save the buffer
-contents by pressing ‘C-x C-s’.
-
- Back to the dashboard ‘M-x gnosis-dashboard’, we can view all our
-themata by pressing ‘n’ or we can press ‘s’ to search our themata. For
-this demo, we are looking for a thema from the demo deck we imported,
-that contains a questions about ‘Vancomycin’.
-
- To link that thema to the note topic we created before, press ‘e’ to
-edit the thema. In the ‘Keimenon’ section delete "Vancomycin" and press
-‘M-x org-gnosis-insert RET Vancomycin’.
-
- After saving the thema with ‘M-x C-c C-c’, you can review all themata
-linked to that topic by ‘M-x gnosis-review-topic’.
-
- View more on *note Linking gnosis themata to org-gnosis content::.
-
-
-File: gnosis.info, Node: Thema Types, Next: Linking gnosis themata to
org-gnosis content, Prev: Getting started Tutorial, Up: Top
-
-3 Thema Types
-*************
-
-Each note is a *thema* consisting of the following components:
-
- • *Keimenon*; The main text or question.
- • *Hypothesis*; Assumptions/hints for the text to guide to the right
- answer
- • For example this is used as hints for cloze type or as choices
- in MCQs
- • *Answer*; The correct response or solution to the keimenon.
- • *Parathema*; expansion of keimenon, that can include links to e.g
- org-gnosis topics or even files, serving as a way to link
- org-gnosis topics to current thema.
-
- Optionally, you can use also add tags for each note.
-
- Themata can have multiple hypotheses and answers (*depending on their
-type*), separated by ‘gnosis-export-separator’, which defaults to
-‘"\n-"’ _(a new line followed by a dash)_.
-
-* Menu:
-
-* Cloze::
-* MCQ::
-
-
-File: gnosis.info, Node: Cloze, Next: MCQ, Up: Thema Types
-
-3.1 Cloze
-=========
-
-A cloze note type is a format where you create sentences or paragraphs
-with "missing" words. A fill-in-the-blanks question.
-
- You can create a cloze note type using ‘M-x gnosis-add-thema’ and
-selecting ‘Cloze’.
-
- Example format:
-
-* Menu:
-
-* Default cloze format::
-* Using anki-like syntax::
-
-
-File: gnosis.info, Node: Default cloze format, Next: Using anki-like syntax,
Up: Cloze
-
-3.1.1 Default cloze format
---------------------------
-
- * Thema :pharmacology:antimicrobials:penicillin:
- :PROPERTIES:
- :GNOSIS_ID: NEW
- :GNOSIS_TYPE: cloze
- :END:
- ** Keimenon
- What is the treatment for Actinomyces infection?
-
- Penicillin
-
- ** Hypothesis
- - drug type
-
- ** Answer
- - Penicillin
-
- ** Parathema
- Sulfonamides → Nocardia
- Actinomyces → [[id:680ca944-8ee9-4513-92d6-25696ee01f48][Penicillin]]
- (treatment is a SNAP)
-
-
-File: gnosis.info, Node: Using anki-like syntax, Prev: Default cloze format,
Up: Cloze
-
-3.1.2 Using anki-like syntax
-----------------------------
-
- * Thema :pharmacology:antimicrobials:penicillin:
- :PROPERTIES:
- :GNOSIS_ID: NEW
- :GNOSIS_TYPE: cloze
- :END:
- ** Keimenon
- {c1:Cyproheptadine::drug name} is a(n) {c2:5-HT2} receptor antagonist
used to treat {c2:serotonin syndrome}
-
- ** Hypothesis
- -
-
- ** Answer
- -
-
- ** Parathema
-
-
- You can format clozes like Anki if you so prefer with hints; e.g
-‘{{c1::Cyproheptadine::drug name}}’
- • You can use the keyword ‘::’ to indicate a hint.
-
- • For each cX-tag there will be created a cloze type note, the above
- example creates 2 cloze type notes.
-
- • Each cX tag can have multiple clozes, but each cloze must be a
- *UNIQUE* word, or a unique combination of words, in given note.
-
- • If a cloze is repeated, such as in phrases with "acetyl" &
- acetylcholine, include whitespace in the cloze to denote a
- single word.
-
-
-File: gnosis.info, Node: MCQ, Prev: Cloze, Up: Thema Types
-
-3.2 MCQ
-=======
-
-Example format:
-
- * Thema
:clinical:
- :PROPERTIES:
- :GNOSIS_ID: NEW
- :GNOSIS_TYPE: mcq
- :END:
- ** Keimenon
- A 60-year-old man comes to the physician with chills, nausea, and
- diffuse muscle aches for 3 days. His niece had similar symptoms 2
- weeks ago and H3N2 influenza strain was isolated from her respiratory
- secretions. He received his influenza vaccination 2 months ago. His
- temperature is 38.5°C. A rapid influenza test is
- positive. Which of the following mechanisms best explains this
- patient's infection despite vaccination?
-
- ** Hypothesis
- - Random point mutations within viral genome
- - Complementing with functional viral proteins
- - Exchange of viral genes between chromosomes
- - Reassortment of viral RNA segments
- - Acquisition of viral surface proteins
-
- ** Answer
- - Random point mutations within viral genome
-
- ** Parathema
- Random point mutations within the viral genome are responsible for
- antigenic drift, which creates a new virus strain.
-
-
-
-File: gnosis.info, Node: Linking gnosis themata to org-gnosis content, Next:
Customization, Prev: Thema Types, Up: Top
-
-4 Linking gnosis themata to org-gnosis content
-**********************************************
-
- • You can create notes using ‘M-x org-gnosis-find’, to link them to a
- gnosis thema use ‘M-x org-gnosis-insert’ to insert a link of said
- topic, either on the keimenon or parathema.
-
- • You can review gnosis questions that are linked to a topic by using
- ‘M-x gnosis-review-topic’.
-
-
-File: gnosis.info, Node: Customization, Next: Gnosis Algorithm, Prev:
Linking gnosis themata to org-gnosis content, Up: Top
-
-5 Customization
-***************
-
-* Menu:
-
-* Typos | String Comparison::
-
-
-File: gnosis.info, Node: Typos | String Comparison, Up: Customization
-
-5.1 Typos | String Comparison
-=============================
-
-You can adjust ‘gnosis-string-difference’, this is a threshold value for
-string comparison that determines the maximum acceptable Levenshtein
-distance between two strings, which identifies their similarity
-
- Let's illustrate with an example:
- (setf gnosis-string-difference 1)
-
- In this scenario, we set ‘gnosis-string-difference’ to 1. This
-implies that two strings will be recognized as similar if they exhibit a
-difference of at most one character edit.
-
- To demonstrate, 'example' and 'examples' will be recognized as
-similar, considering that the latter involves just one additional
-character."
-
-
-File: gnosis.info, Node: Gnosis Algorithm, Next: Editing themata, Prev:
Customization, Up: Top
-
-6 Gnosis Algorithm
-******************
-
-Each gnosis note has a gnosis score, which is a list of 3 values,
-(gnosis-plus gnosis-minus gnosis-synolon/total). Gnosis-synolon is what
-is used to determine the next interval upon a successful recall,
-gnosis-plus is added to gnosis-synolon upon a successful recall as well,
-gnosis-minus is subtracted from gnosis-synolon upon failing to recall a
-note's answer.
-
- Gnosis has 2 special events, one is ‘anagnosis’ _ανάγνωση_ and
-‘lethe’ _λήθη_.
-
-* Menu:
-
-* Anagnosis Event::
-* Lethe event::
-* Proto::
-
-
-File: gnosis.info, Node: Anagnosis Event, Next: Lethe event, Up: Gnosis
Algorithm
-
-6.1 Anagnosis Event
-===================
-
-‘Anagnosis’, which means comprehension & recognition of knowledge, is
-triggered when the consecutive successful or failed recalls are equal or
-greater to anagnosis value.
-
- When ‘anagnosis’ is triggered by consecutive *successful* recalls,
-‘epignosis’ value is added to gnosis-plus. _Epignosis means accuracy of
-knowledge_.
-
- When ‘anagnosis’ is triggered by consecutive *failed* recalls,
-‘agnoia’ value is added to gnosis-minus. _Agnoia means lack of
-knowledge_
-
- You can set specific values for each deck and tag of the variables
-mentioned above by adjusting ‘gnosis-custom-values’.
-
-
-File: gnosis.info, Node: Lethe event, Next: Proto, Prev: Anagnosis Event,
Up: Gnosis Algorithm
-
-6.2 Lethe event
-===============
-
-The ‘Lethe’ event triggers after a certain number of consecutive
-failures to recall an answer correctly.
-
- When this threshold is reached, the next interval is reset to 0.
-
- For example, with lethe value of 2, upon having 2 consecutive failed
-recalls the next review will be set for the current day.
-
-
-File: gnosis.info, Node: Proto, Prev: Lethe event, Up: Gnosis Algorithm
-
-6.3 Proto
-=========
-
-The default initial interval is defined at ‘gnosis-algorithm-proto’, you
-can define a custom initial interval for each deck as well.
-
- ‘gnosis-algorithm-interval’ is a list of numbers, representing the
-first initial intervals for successful reviews. There is no limit on
-the length of the list.
-
- Example:
-
- (setq gnosis-algorithm-interval '(0 1 2 30))
-
- Upon each successful note review, the algorithm will increment to the
-next interval value: 0 days (0), 1 day later (1), 2 days later (2), and
-30 days later.
-
- Upon failing to review a note without completing it's proto
-successful reviews, it's next review date will be on the same date.
-
-
-File: gnosis.info, Node: Editing themata, Next: Sync between devices, Prev:
Gnosis Algorithm, Up: Top
-
-7 Editing themata
-*****************
-
- • Currently there are 2 ways for editing notes:
-
- • You can edit a note after review by pressing ‘e’
- • Open ‘gnosis-dashboard’ with ‘M-x gnosis-dashboard’, find the
- note you want to edit and press ‘e’
-
-
-File: gnosis.info, Node: Sync between devices, Next: Interactions with other
software, Prev: Editing themata, Up: Top
-
-8 Sync between devices
-**********************
-
-Gnosis uses git to maintain data integrity and facilitate
-synchronization across devices.
-
- You will need to configure your remote manually.
-
- Example:
-
- cd ~/.emacs.d/gnosis # default location for gnosis, no-littering is
~/.emacs.d/var/gnosis
- git init # After completing your first review session, a git repo should
have been initialized automatically.
- git remote add origin <remote_url>
- git push --set-upstream origin master
-
- You can interactively use ‘gnosis-vc-push’ & ‘gnosis-vc-pull’. As
-the name suggests, they rely on ‘vc’ to work properly.
-
- Depending on your setup, ‘vc’ might require an external package for
-the ssh passphrase dialog, such as ‘x11-ssh-askpass’.
-
- To automatically push changes after a review session, add this to
-your configuration:
- (setf gnosis-vc-auto-push t)
- (gnosis-vc-pull) ;; Run vc-pull for gnosis on startup
-
-
-File: gnosis.info, Node: Interactions with other software, Next:
Contributing, Prev: Sync between devices, Up: Top
-
-9 Interactions with other software
-**********************************
-
-* Menu:
-
-* emacs-no-littering::
-
-
-File: gnosis.info, Node: emacs-no-littering, Up: Interactions with other
software
-
-9.1 emacs-no-littering
-======================
-
-If you are a user of emacs-no-littering
-(https://github.com/emacscollective/no-littering), you can theme Gnosis
-to fit its standards by adding the following snippet to your
-configuration:
-
- (setq gnosis-dir (no-littering-expand-var-file-name "gnosis/"))
-
- This sets ‘gnosis-dir’ to ‘~/.emacs.d/var/gnosis’, in line with the
-folders of other packages.
-
-
-File: gnosis.info, Node: Contributing, Prev: Interactions with other
software, Up: Top
-
-10 Contributing
-***************
-
-Thank you for considering contributing back to gnosis. You can
-contribute by submitting a pull request on the codeberg mirror
-repository, or directly sending me patch via email.
-
-* Menu:
-
-* How to create a patch::
-
-
-File: gnosis.info, Node: How to create a patch, Up: Contributing
-
-10.1 How to create a patch
-==========================
-
-_Example:_
-
- $ git clone https://git.thanosapollo.com/gnosis.git && cd gnosis
- $ emacs something
- $ git add something
- $ git commit -m "Fix something"
- $ git format-patch HEAD^1
- 0001-Fix-something.patch
-
- You can sent the patch to "Thanos Apollo", the email of which you can
-find on the git log.
-
-
-
-Tag Table:
-Node: Top209
-Node: Introduction1605
-Node: Getting started Tutorial2154
-Node: Gnosis Dashboard2584
-Node: Linking Themata to Note Topics3200
-Node: Thema Types4247
-Node: Cloze5223
-Node: Default cloze format5614
-Node: Using anki-like syntax6226
-Node: MCQ7318
-Node: Linking gnosis themata to org-gnosis content8524
-Node: Customization9061
-Node: Typos | String Comparison9265
-Node: Gnosis Algorithm10021
-Node: Anagnosis Event10686
-Node: Lethe event11433
-Node: Proto11877
-Node: Editing themata12640
-Node: Sync between devices13038
-Node: Interactions with other software14116
-Node: emacs-no-littering14342
-Node: Contributing14842
-Node: How to create a patch15184
-
-End Tag Table
-
-
-Local Variables:
-coding: utf-8
-End:
diff --git a/doc/gnosis.texi b/doc/gnosis.texi
deleted file mode 100644
index b8807f2473..0000000000
--- a/doc/gnosis.texi
+++ /dev/null
@@ -1,534 +0,0 @@
-\input texinfo @c -*- texinfo -*-
-@c %**start of header
-@setfilename gnosis.info
-@settitle Gnosis User Manual
-@documentencoding UTF-8
-@documentlanguage en
-@set MAINTAINERSITE @uref{https://thanosapollo.org,maintainer webpage}
-@set MAINTAINER Thanos Apollo
-@set MAINTAINEREMAIL @email{[email protected]}
-@set MAINTAINERCONTACT @uref{mailto:[email protected],contact the
maintainer}
-@c %**end of header
-
-@dircategory Emacs misc features
-@direntry
-* Gnosis: (gnosis). Spaced Repetition System.
-@end direntry
-
-@finalout
-@titlepage
-@title Gnosis User Manual
-@author Thanos Apollo (@email{public@@thanosapollo.org})
-@end titlepage
-
-@ifnottex
-@node Top
-@top Gnosis User Manual
-
-Gnosis is a learning tool designed to enhance memory retention by
-integrating a thema-taking system with spaced repetition and
-self-testing.
-
-@noindent
-This manual is written for Gnosis version 0.5.8, released on 2025-11-08.
-
-@itemize
-@item
-Manual:
-@itemize
-@item
-@uref{https://elpa.nongnu.org/nongnu/doc/gnosis.html}
-@item
-@uref{https://thanosapollo.org/projects/gnosis/} (Mirror)
-@end itemize
-@item
-Git repositories:
-@itemize
-@item
-@uref{https://git.thanosapollo.org/gnosis}
-@item
-@uref{https://codeberg.org/thanosapollo/emacs-gnosis} (Mirror)
-@item
-@uref{https://git.savannah.gnu.org/cgit/emacs/nongnu.git/?h=elpa/gnosis}
(Mirror)
-@end itemize
-@end itemize
-
-@insertcopying
-
-@end ifnottex
-
-@menu
-* Introduction::
-* Getting started Tutorial::
-* Thema Types::
-* Linking gnosis themata to org-gnosis content::
-* Customization::
-* Gnosis Algorithm::
-* Editing themata::
-* Sync between devices::
-* Interactions with other software::
-* Contributing::
-
-@detailmenu
---- The Detailed Node Listing ---
-
-Getting started Tutorial
-
-* Gnosis Dashboard::
-* Linking Themata to Note Topics::
-
-Thema Types
-
-* Cloze::
-* MCQ::
-
-Cloze
-
-* Default cloze format::
-* Using anki-like syntax::
-
-Customization
-
-* Typos | String Comparison::
-
-Gnosis Algorithm
-
-* Anagnosis Event::
-* Lethe event::
-* Proto::
-
-Interactions with other software
-
-* emacs-no-littering::
-
-Contributing
-
-* How to create a patch::
-
-@end detailmenu
-@end menu
-
-@node Introduction
-@chapter Introduction
-
-Gnosis consists of a note taking module (@samp{org-gnosis}) and a self
-testing module.
-
-Users can utilize each Gnosis module independently, but the intended
-workflow begins with writing a note on a specific topic. After
-completing the note, the user creates themata (flashcard-like
-questions) related to the topic.
-
-These themata are then used for spaced repetition reviews utilizing
-the @ref{Gnosis Algorithm}.
-
-@node Getting started Tutorial
-@chapter Getting started Tutorial
-
-To follow this tutorial, clone the demo deck available at codeberg
-
-Demo Deck: @uref{https://codeberg.org/thanosapollo/gnosis-demo}
-
-Import it to your gnosis collection via @kbd{M-x gnosis-import-deck}
-
-@menu
-* Gnosis Dashboard::
-* Linking Themata to Note Topics::
-@end menu
-
-@node Gnosis Dashboard
-@section Gnosis Dashboard
-
-The first thing new users should familiarize themselves with is
-@samp{gnosis-dashboard}, which you can access via @kbd{M-x gnosis-dashboard}.
-
-You can start a review session from the dashboard by pressing @kbd{r} or with
@kbd{M-x gnosis-review}.
-
-NOTE: Gnosis supports reviewing specifics topics for notes of
-@samp{org-gnosis} with @kbd{M-x gnosis-review-topic}
-
-You can add new themata from the dashboard @kbd{a} or with @kbd{M-x
gnosis-add-thema}
-
-@node Linking Themata to Note Topics
-@section Linking Themata to Note Topics
-
-We can create a demo note topic for Vancomycin, an antibiotic, with
-@kbd{M-x org-gnosis-find RET Vancomycin}. For this demo, just save
-the buffer contents by pressing @kbd{C-x C-s}.
-
-Back to the dashboard @kbd{M-x gnosis-dashboard}, we can view all
-our themata by pressing @kbd{n} or we can press @kbd{s} to
-search our themata. For this demo, we are looking for a thema from
-the demo deck we imported, that contains a questions about
-@samp{Vancomycin}.
-
-To link that thema to the note topic we created before, press
-@kbd{e} to edit the thema. In the @samp{Keimenon} section delete
-``Vancomycin'' and press @kbd{M-x org-gnosis-insert RET Vancomycin}.
-
-After saving the thema with @kbd{M-x C-c C-c}, you can review all
-themata linked to that topic by @kbd{M-x gnosis-review-topic}.
-
-View more on @ref{Linking gnosis themata to org-gnosis content}.
-
-@node Thema Types
-@chapter Thema Types
-
-Each note is a @strong{thema} consisting of the following components:
-
-@itemize
-@item
-@strong{Keimenon}; The main text or question.
-@item
-@strong{Hypothesis}; Assumptions/hints for the text to guide to the right
answer
-@itemize
-@item
-For example this is used as hints for cloze type or as choices in MCQs
-@end itemize
-@item
-@strong{Answer}; The correct response or solution to the keimenon.
-@item
-@strong{Parathema}; expansion of keimenon, that can include links to e.g
-org-gnosis topics or even files, serving as a way to link org-gnosis
-topics to current thema.
-@end itemize
-
-Optionally, you can use also add tags for each note.
-
-Themata can have multiple hypotheses and answers (@strong{depending on
-their type}), separated by @samp{gnosis-export-separator}, which defaults to
-@samp{"\n-"} @emph{(a new line followed by a dash)}.
-
-@menu
-* Cloze::
-* MCQ::
-@end menu
-
-@node Cloze
-@section Cloze
-
-A cloze note type is a format where you create sentences or paragraphs
-with ``missing'' words. A fill-in-the-blanks question.
-
-You can create a cloze note type using @samp{M-x gnosis-add-thema} and
-selecting @code{Cloze}.
-
-Example format:
-
-@menu
-* Default cloze format::
-* Using anki-like syntax::
-@end menu
-
-@node Default cloze format
-@subsection Default cloze format
-
-@example
-* Thema :pharmacology:antimicrobials:penicillin:
-:PROPERTIES:
-:GNOSIS_ID: NEW
-:GNOSIS_TYPE: cloze
-:END:
-** Keimenon
-What is the treatment for Actinomyces infection?
-
-Penicillin
-
-** Hypothesis
-- drug type
-
-** Answer
-- Penicillin
-
-** Parathema
-Sulfonamides → Nocardia
-Actinomyces → [[id:680ca944-8ee9-4513-92d6-25696ee01f48][Penicillin]]
-(treatment is a SNAP)
-@end example
-
-@node Using anki-like syntax
-@subsection Using anki-like syntax
-
-@example
-* Thema :pharmacology:antimicrobials:penicillin:
-:PROPERTIES:
-:GNOSIS_ID: NEW
-:GNOSIS_TYPE: cloze
-:END:
-** Keimenon
-@{c1:Cyproheptadine::drug name@} is a(n) @{c2:5-HT2@} receptor antagonist used
to treat @{c2:serotonin syndrome@}
-
-** Hypothesis
--
-
-** Answer
--
-
-** Parathema
-
-@end example
-
-
-You can format clozes like Anki if you so prefer with hints; e.g
@code{@{@{c1::Cyproheptadine::drug name@}@}}
-@itemize
-@item
-You can use the keyword @samp{::} to indicate a hint.
-@end itemize
-
-@itemize
-@item
-For each cX-tag there will be created a cloze type note, the above
-example creates 2 cloze type notes.
-
-@item
-Each cX tag can have multiple clozes, but each cloze must be a
-@strong{UNIQUE} word, or a unique combination of words, in given note.
-
-@itemize
-@item
-If a cloze is repeated, such as in phrases with ``acetyl'' &
-acetylcholine, include whitespace in the cloze to denote a single
-word.
-@end itemize
-@end itemize
-
-@node MCQ
-@section MCQ
-
-Example format:
-@example
-
-* Thema :clinical:
-:PROPERTIES:
-:GNOSIS_ID: NEW
-:GNOSIS_TYPE: mcq
-:END:
-** Keimenon
-A 60-year-old man comes to the physician with chills, nausea, and
-diffuse muscle aches for 3 days. His niece had similar symptoms 2
-weeks ago and H3N2 influenza strain was isolated from her respiratory
-secretions. He received his influenza vaccination 2 months ago. His
-temperature is 38.5°C. A rapid influenza test is
-positive. Which of the following mechanisms best explains this
-patient's infection despite vaccination?
-
-** Hypothesis
-- Random point mutations within viral genome
-- Complementing with functional viral proteins
-- Exchange of viral genes between chromosomes
-- Reassortment of viral RNA segments
-- Acquisition of viral surface proteins
-
-** Answer
-- Random point mutations within viral genome
-
-** Parathema
-Random point mutations within the viral genome are responsible for
-antigenic drift, which creates a new virus strain.
-
-@end example
-
-@node Linking gnosis themata to org-gnosis content
-@chapter Linking gnosis themata to org-gnosis content
-
-@itemize
-@item
-You can create notes using @samp{M-x org-gnosis-find}, to link them to a
-gnosis thema use @samp{M-x org-gnosis-insert} to insert a link of said
-topic, either on the keimenon or parathema.
-
-@item
-You can review gnosis questions that are linked to a topic by using
-@samp{M-x gnosis-review-topic}.
-@end itemize
-
-@node Customization
-@chapter Customization
-
-@menu
-* Typos | String Comparison::
-@end menu
-
-@node Typos | String Comparison
-@section Typos | String Comparison
-
-You can adjust @samp{gnosis-string-difference}, this is a threshold value
-for string comparison that determines the maximum acceptable
-Levenshtein distance between two strings, which identifies their
-similarity
-
-Let's illustrate with an example:
-@lisp
-(setf gnosis-string-difference 1)
-@end lisp
-
-In this scenario, we set @samp{gnosis-string-difference} to 1. This implies
-that two strings will be recognized as similar if they exhibit a
-difference of at most one character edit.
-
-To demonstrate, 'example' and 'examples' will be recognized as
-similar, considering that the latter involves just one additional
-character."
-
-@node Gnosis Algorithm
-@chapter Gnosis Algorithm
-
-Each gnosis note has a gnosis score, which is a list of 3 values,
-(gnosis-plus gnosis-minus gnosis-synolon/total). Gnosis-synolon is
-what is used to determine the next interval upon a successful recall,
-gnosis-plus is added to gnosis-synolon upon a successful recall as
-well, gnosis-minus is subtracted from gnosis-synolon upon failing to
-recall a note's answer.
-
-Gnosis has 2 special events, one is @code{anagnosis} @emph{ανάγνωση} and
@code{lethe} @emph{λήθη}.
-
-@menu
-* Anagnosis Event::
-* Lethe event::
-* Proto::
-@end menu
-
-@node Anagnosis Event
-@section Anagnosis Event
-
-@code{Anagnosis}, which means comprehension & recognition of knowledge, is
-triggered when the consecutive successful or failed recalls are equal
-or greater to anagnosis value.
-
-When @code{anagnosis} is triggered by consecutive @strong{successful} recalls,
-@code{epignosis} value is added to gnosis-plus. @emph{Epignosis means
accuracy of knowledge}.
-
-When @code{anagnosis} is triggered by consecutive @strong{failed} recalls,
-@code{agnoia} value is added to gnosis-minus. @emph{Agnoia means lack of
knowledge}
-
-You can set specific values for each deck and tag of the variables
-mentioned above by adjusting @samp{gnosis-custom-values}.
-
-@node Lethe event
-@section Lethe event
-
-The @code{Lethe} event triggers after a certain number of consecutive
-failures to recall an answer correctly.
-
-When this threshold is reached, the next interval is reset to 0.
-
-For example, with lethe value of 2, upon having 2 consecutive failed
-recalls the next review will be set for the current day.
-
-@node Proto
-@section Proto
-
-The default initial interval is defined at
-@samp{gnosis-algorithm-proto}, you can define a custom initial interval
-for each deck as well.
-
-@samp{gnosis-algorithm-interval} is a list of numbers, representing the
-first initial intervals for successful reviews. There is no limit on
-the length of the list.
-
-Example:
-
-@lisp
-(setq gnosis-algorithm-interval '(0 1 2 30))
-@end lisp
-
-Upon each successful note review, the algorithm will increment to the
-next interval value: 0 days (0), 1 day later (1), 2 days later
-(2), and 30 days later.
-
-Upon failing to review a note without completing it's proto successful reviews,
-it's next review date will be on the same date.
-
-@node Editing themata
-@chapter Editing themata
-
-@itemize
-@item
-Currently there are 2 ways for editing notes:
-
-@itemize
-@item
-You can edit a note after review by pressing @code{e}
-@item
-Open @samp{gnosis-dashboard} with @samp{M-x gnosis-dashboard}, find the note
you want to edit and press @code{e}
-@end itemize
-@end itemize
-
-@node Sync between devices
-@chapter Sync between devices
-
-Gnosis uses git to maintain data integrity and facilitate
-synchronization across devices.
-
-You will need to configure your remote manually.
-
-Example:
-
-@example
-cd ~/.emacs.d/gnosis # default location for gnosis, no-littering is
~/.emacs.d/var/gnosis
-git init # After completing your first review session, a git repo should have
been initialized automatically.
-git remote add origin <remote_url>
-git push --set-upstream origin master
-@end example
-
-
-You can interactively use @samp{gnosis-vc-push} & @samp{gnosis-vc-pull}. As the
-name suggests, they rely on @samp{vc} to work properly.
-
-Depending on your setup, @samp{vc} might require an external package for
-the ssh passphrase dialog, such as @code{x11-ssh-askpass}.
-
-To automatically push changes after a review session, add this to your
configuration:
-@lisp
-(setf gnosis-vc-auto-push t)
-(gnosis-vc-pull) ;; Run vc-pull for gnosis on startup
-@end lisp
-
-@node Interactions with other software
-@chapter Interactions with other software
-
-@menu
-* emacs-no-littering::
-@end menu
-
-@node emacs-no-littering
-@section emacs-no-littering
-
-If you are a user of @uref{https://github.com/emacscollective/no-littering,
emacs-no-littering}, you can theme Gnosis to fit
-its standards by adding the following snippet to your configuration:
-
-@lisp
-(setq gnosis-dir (no-littering-expand-var-file-name "gnosis/"))
-@end lisp
-
-This sets @samp{gnosis-dir} to @samp{~/.emacs.d/var/gnosis}, in line with the
folders of other packages.
-
-@node Contributing
-@chapter Contributing
-
-Thank you for considering contributing back to gnosis. You can
-contribute by submitting a pull request on the codeberg mirror
-repository, or directly sending me patch via email.
-
-@menu
-* How to create a patch::
-@end menu
-
-@node How to create a patch
-@section How to create a patch
-
-@emph{Example:}
-
-@example
-$ git clone https://git.thanosapollo.com/gnosis.git && cd gnosis
-$ emacs something
-$ git add something
-$ git commit -m "Fix something"
-$ git format-patch HEAD^1
-0001-Fix-something.patch
-@end example
-
-You can sent the patch to ``Thanos Apollo'', the email of which you can
-find on the git log.
-
-@bye
