Hi all,
I am trying to debug an issue with installing org-mode from Melpa.
After installing org from Melpa, I get this on starting emacs:
byte-code: Invalid function: org-babel-header-args-safe-fn
Org-mode version 8.3.3 (8.3.3-51-g30bcff-elpaplus @
/Users/jkitchin/Desktop/jmax-git/elpa/org-plus-contrib-20160208/)
It is happening when I try to change some default headers.
Debugger entered--Lisp error: (invalid-function org-babel-header-args-safe-fn)
org-babel-header-args-safe-fn((:cache :colnames :comments :exports :epilogue
:hlines :noeval :noweb :noweb-ref :noweb-sep :padline :prologue :rownames :sep
:session :tangle :wrap (:eval "never" "query") (:results lambda (str) (not
(string-match "file" str))) :width :height :bg :units :pointsize :antialias
:quality :compression :res :type :family :title :fonts :version :paper
:encoding :pagecentre :colormodel :useDingbats :horizontal))
byte-code("\301\302\303\304!#\210\305\306\307\310\311\312\313\314\315\316&
\207" [ob-R-safe-header-args put org-babel-default-header-args:R
safe-local-variable org-babel-header-args-safe-fn custom-declare-variable
org-babel-R-command "R --slave --no-save" "Name of command to use for executing
R code." :group org-babel :version "24.1" :type string] 10)
require(ob-R)
#[(pair) "A\303@!\211\203 \304\305\306 P!!\202%\307\305\310
P!!\210\307\305\311 P!!*\207" [pair lang active symbol-name require intern
"ob-" fmakunbound "org-babel-execute:" "org-babel-expand-body:"] 5]((R . t))
mapc(#[(pair) "A\303@!\211\203 \304\305\306 P!!\202%\307\305\310
P!!\210\307\305\311 P!!*\207" [pair lang active symbol-name require intern
"ob-" fmakunbound "org-babel-execute:" "org-babel-expand-body:"] 5]
((emacs-lisp . t) (python . t) (sh . t) (matlab . t) (sqlite . t) (ruby . t)
(perl . t) (org . t) (dot . t) (plantuml . t) (R . t)))
org-babel-do-load-languages(org-babel-load-languages ((emacs-lisp . t)
(python . t) (sh . t) (matlab . t) (sqlite . t) (ruby . t) (perl . t) (org . t)
(dot . t) (plantuml . t) (R . t)))
eval-buffer(#<buffer *load*> nil
"/Users/jkitchin/Desktop/jmax-git/jmax-org.el" nil t) ; Reading at buffer
position 7097
If I run this:
(byte-recompile-file
(expand-file-name "ob-R.el"
(file-name-directory (locate-library "org")))
t)
the problem goes away.
I haven't been able to come up with a simple reproducible example. This
happens when I start my jmax starter kit from scratch. It does not
happen though if I strip that down to just installing org, then I do not
see the issue.
Any hints on tracking this down? Thanks,
--
Professor John Kitchin
Doherty Hall A207F
Department of Chemical Engineering
Carnegie Mellon University
Pittsburgh, PA 15213
412-268-7803
@johnkitchin
http://kitchingroup.cheme.cmu.edu
