Remember to cover the basics, that is, what you expected to happen and
what in fact did happen. You don't know how to make a good report? See
https://orgmode.org/manual/Feedback.html#Feedback
Your bug report will be posted to the Org mailing list.
------------------------------------------------------------------------
It gives this error message:
```
Warning (org-element): org-element--cache: Org parser error in
phd_2025.org::9689. Resetting.
The error was: (wrong-type-argument integer-or-marker-p nil)
Backtrace:
nil
Please report this to Org mode mailing list (M-x org-submit-bug-report).
```
Emacs : GNU Emacs 29.4 (build 2, x86_64-pc-linux-gnu, GTK+ Version 3.24.33,
cairo version 1.16.0)
of 2024-11-04
Package: Org mode version 9.7.31 (9.7.31-??-4e6d38d1a @
/home/buntu/.config/emacs/.local/straight/build-29.4/org/)
current state:
==============
(setq
org-link-elisp-confirm-function nil
org-directory "~/org/"
org-after-refile-insert-hook '(+org-save-buffer-after-capture-h)
org-indirect-buffer-display 'current-window
org-hide-emphasis-markers t
org-bibtex-headline-format-function 'org-bibtex-headline-format-default
org-download-file-format-function 'org-download-file-format-default
org-log-done t
org-load-hook '(+org-init-org-directory-h +org-init-appearance-h
+org-init-agenda-h
+org-init-attachments-h
+org-init-babel-h +org-init-babel-lazy-loader-h
+org-init-capture-defaults-h +org-init-capture-frame-h
+org-init-custom-links-h +org-init-export-h +org-init-habit-h
+org-init-hacks-h +org-init-keybinds-h
+org-init-popup-rules-h +org-init-smartparens-h)
org-log-into-drawer t
org-startup-folded nil
org-babel-after-execute-hook '(+org-redisplay-inline-images-in-babel-result-h)
org-link-abbrev-alist '(("doomdir" . "/home/buntu/.config/doom/%s")
("emacsdir" .
"/home/buntu/.config/emacs/%s")
("doom-repo" .
"https://github.com/doomemacs/doomemacs/%s";)
("wolfram" . "https://wolframalpha.com/input/?i=%s";)
("wikipedia" . "https://en.wikipedia.org/wiki/%s";)
("duckduckgo"
. "https://duckduckgo.com/?q=%s";)
("kagi" . "https://kagi.com/search?q=%s";) ("gmap" .
"https://maps.google.com/maps?q=%s";)
("gimages" . "https://google.com/images?q=%s";)
("google" .
"https://google.com/search?q=";)
("youtube" . "https://youtube.com/watch?v=%s";)
("github" . "https://github.com/%s";))
org-agenda-skip-scheduled-if-done t
org-agenda-files '("~/org/")
org-capture-templates '(("t" "Personal todo" entry (file+headline
+org-capture-todo-file
"Inbox") "* [ ] %?\n%i\n%a"
:prepend t)
("n" "Personal notes" entry (file+headline
+org-capture-notes-file "Inbox") "* %u %?\n%i\n%a"
:prepend t)
("j" "Journal" entry (file+olp+datetree
+org-capture-journal-file) "* %U %?\n%i\n%a" :prepend t)
("p" "Templates for projects")
("pt" "Project-local todo" entry (file+headline
+org-capture-project-todo-file "Inbox")
"* TODO %?\n%i\n%a" :prepend t)
("pn" "Project-local notes" entry (file+headline
+org-capture-project-notes-file "Inbox")
"* %U %?\n%i\n%a" :prepend t)
("pc" "Project-local changelog" entry
(file+headline +org-capture-project-changelog-file
"Unreleased")
"* %U %?\n%i\n%a" :prepend t)
("o" "Centralized templates for projects")
("ot" "Project todo" entry
#'+org-capture-central-project-todo-file "* TODO %?\n %i\n %a" :heading
"Tasks" :prepend nil)
("on" "Project notes" entry
#'+org-capture-central-project-notes-file "* %U %?\n %i\n %a" :heading
"Notes" :prepend t)
("oc" "Project changelog" entry
#'+org-capture-central-project-changelog-file "* %U %?\n %i\n %a"
:heading "Changelog" :prepend t)
)
org-persist-after-read-hook '(org-element--cache-persist-after-read)
org-refile-targets '((nil :maxlevel . 3) (org-agenda-files :maxlevel . 3))
org-export-before-parsing-hook '(org-attach-expand-links)
org-cycle-tab-first-hook '(+org-yas-expand-maybe-h +org-indent-maybe-h
org-babel-hide-result-toggle-maybe
org-babel-header-arg-expand
+org-clear-babel-results-h +org-cycle-only-current-subtree-h)
org-default-notes-file "/home/buntu/org/notes.org"
org-refile-use-outline-path 'file
org-archive-hook '(org-attach-archive-delete-maybe)
org-file-apps '((remote . emacs) (auto-mode . emacs) (directory . emacs)
("\\.mm\\'" .
default) ("\\.x?html?\\'" . default)
("\\.pdf\\'" . default))
org-cycle-hook '(org-cycle-hide-archived-subtrees org-cycle-show-empty-lines
org-cycle-optimize-window-after-visibility-change
org-cycle-display-inline-images)
org-persist-before-read-hook '(org-element--cache-persist-before-read)
org-font-lock-set-keywords-hook '(doom-themes-enable-org-fontification)
org-modules '(ol-bibtex)
org-yank-image-file-name-function 'org-yank-image-autogen-filename
org-image-actual-width 600
org-attach-use-inheritance t
org-mode-local-vars-hook '(+org-init-gifs-h)
org-mode-hook '(er/add-org-mode-expansions #[0 "\301\211\207"
[imenu-create-index-function org-imenu-get-tree] 2]
(closure (t) nil (org-bullets-mode 1))
(closure (t) (&rest _) (add-hook
'save-place-after-find-file-hook
#'+org-make-last-point-visible-h nil t))
+lookup--init-org-mode-handlers-h
#[0 "\300\301\302\303\304$\207" [add-hook
change-major-mode-hook
org-fold-show-all append local] 5]
#[0 "\300\301\302\303\304$\207" [add-hook
change-major-mode-hook
org-babel-show-result-all append local] 5]
org-babel-result-hide-spec org-babel-hide-all-hashes
doom-disable-show-paren-mode-h
doom-disable-show-trailing-whitespace-h evil-org-mode
org-eldoc-load
toc-org-enable writegood-mode
flyspell-mode embrace-org-mode-hook
+corfu-add-cape-elisp-block-h)
org-agenda-skip-deadline-if-done t
org-src-window-setup 'other-window
org-id-locations-file "/home/buntu/org/.orgids"
org-agenda-span 10
org-priority-faces '((65 . error) (66 . warning) (67 . shadow))
org-ellipsis " [...] "
org-download-abbreviate-filename-function 'file-relative-name
org-agenda-tags-column 100
org-confirm-shell-link-function 'yes-or-no-p
org-agenda-skip-unavailable-files t
org-download-annotate-function 'org-download-annotate-default
org-download-screenshot-method "scrot"
outline-isearch-open-invisible-function 'outline-isearch-open-invisible
org-use-sub-superscripts '{}
org-super-agenda-mode t
org-startup-indented t
org-sort-function 'string-collate-lessp
org-agenda-mode-hook '(+org-habit-resize-graph-h evil-org-agenda-mode)
org-link-translation-function 'toc-org-unhrefify
org-agenda-before-write-hook '(org-agenda-add-entry-text)
org-src-preserve-indentation t
org-entities-user '(("flat" "\\flat" nil "" "" "266D" "♭") ("sharp" "\\sharp"
nil "" "" "266F" "♯"))
org-src-mode-hook '(org-src-babel-configure-edit-buffer
org-src-mode-configure-edit-buffer)
org-agenda-window-setup 'current-window
org-tags-exclude-from-inheritance '("crypt")
org-clock-out-remove-zero-time-clocks t
org-hide-leading-stars t
org-todo-keywords '((sequence "TODO(t)" "PROJ(p)" "LOOP(r)" "STRT(s)"
"WAIT(w)" "HOLD(h)"
"IDEA(i)" "|" "DONE(d)" "KILL(k)")
(sequence "[ ](T)" "[-](S)" "[?](W)" "|" "[X](D)")
(sequence "|" "OKAY(o)" "YES(y)" "NO(n)"))
org-agenda-inhibit-startup t
org--warnings '("org-element--cache: Org parser error in phd_2025.org::9689.
Resetting.\n The error was: (wrong-type-argument integer-or-marker-p nil)\n
Backtrace:\nnil\n Please report this to Org mode mailing list (M-x
org-submit-bug-report).")
org-blocker-hook '(org-block-todo-from-children-or-siblings-or-parent)
org-preview-latex-image-directory
"/home/buntu/.config/emacs/.local/cache/org/latex/"
org-fontify-whole-heading-line t
org-speed-command-hook '(org-speed-command-activate
org-babel-speed-command-activate)
org-clock-persist-file "/home/buntu/.config/emacs/.local/etc/org-clock-save.el"
org-eldoc-breadcrumb-separator " → "
org-persist-directory "/home/buntu/.config/emacs/.local/cache/org/persist/"
org-export-backends '(md ascii html icalendar latex odt)
org-enforce-todo-dependencies t
org-confirm-babel-evaluate nil
org-fold-core-isearch-open-function 'org-fold-core--isearch-reveal
org-clock-in-resume t
org-M-RET-may-split-line nil
org-clock-persist 'history
org-persist-before-write-hook '(org-element--cache-persist-before-write)
org-tab-first-hook '(+org-yas-expand-maybe-h +org-indent-maybe-h
org-babel-hide-result-toggle-maybe
org-babel-header-arg-expand +org-clear-babel-results-h
+org-cycle-only-current-subtree-h)
org-agenda-todo-ignore-scheduled t
org-link-shell-confirm-function 'yes-or-no-p
org-agenda-finalize-hook '(+org-exclude-agenda-buffers-from-workspace-h)
org-babel-pre-tangle-hook '(save-buffer)
org-agenda-loop-over-headlines-in-active-region nil
org-fontify-quote-and-verse-blocks t
org-agenda-start-on-weekday nil
org-attach-id-dir "/home/buntu/org/.attach/"
org-todo-keyword-faces '(("[-]" . +org-todo-active) ("STRT" .
+org-todo-active) ("[?]" .
+org-todo-onhold)
("WAIT" . +org-todo-onhold) ("HOLD" .
+org-todo-onhold) ("PROJ"
. +org-todo-project)
("NO" . +org-todo-cancel) ("KILL" . +org-todo-cancel))
org-capture-mode-hook '(+org-show-target-in-capture-header-h evil-insert-state)
org-agenda-deadline-faces '((1.001 . error) (1.0 . org-warning) (0.5 .
org-upcoming-deadline)
(0.0 . org-upcoming-distant-deadline))
org-occur-hook '(org-first-headline-recenter)
org-capture-after-finalize-hook '(+org-capture-cleanup-frame-h)
org-metadown-hook '(org-babel-pop-to-session-maybe)
org-link-parameters '(("orgit-rev" :store orgit-rev-store :follow
orgit-rev-open :export
orgit-rev-export :complete
orgit-rev-complete-link)
("orgit-log" :store orgit-log-store :follow
orgit-log-open :export
orgit-log-export :complete
orgit-log-complete-link)
("orgit" :store orgit-status-store :follow
orgit-status-open
:export orgit-status-export :complete
orgit-status-complete-link)
("bibtex" :follow org-bibtex-open :store
org-bibtex-store-link)
("id" :follow org-id-open :store org-id-store-link-maybe)
("notmuch-tree" :store org-notmuch-tree-store-link
:follow
org-notmuch-tree-open)
("notmuch-search" :store org-notmuch-search-store-link
:follow
org-notmuch-search-open)
("notmuch" :store org-notmuch-store-link :follow
org-notmuch-open)
("elfeed" :follow elfeed-link-open :store
elfeed-link-store-link)
("img" :image-data-fun +org-inline-image-data-fn)
("doom-changelog" :follow
(closure (t) (link) (find-file (doom-path doom-docs-dir
"changelog.org"))
(org-match-sparse-tree nil link))
)
("doom-user" :follow
(closure (t) (link)
(browse-url
(format "https://github.com/%s"; (string-remove-prefix
"@"
(+org-link-read-desc-at-point link))))
)
:face (closure (t) (_) 'org-priority))
("doom-ref" :follow
(closure (t) (link)
(let
((link (+org-link-read-desc-at-point link)) (url
"https://github.com";)
(doom-repo "doomemacs/doomemacs"))
(let ((saved-match-data (match-data)))
(unwind-protect
(progn
(browse-url
(cond
((string-match
"^\\([^/]+\\(?:/[^/]+\\)?\\)?#\\([0-9]+\\(?:#.*\\)?\\)" link)
(format "%s/%s/issues/%s" url (or (match-string
1 link)
doom-repo) (match-string 2 link)))
((string-match
"^\\([^/]+\\(?:/[^/]+\\)?@\\)?\\([a-z0-9]\\{7,\\}\\(?:#.*\\)?\\)" link)
(format "%s/%s/commit/%s" url (or (match-string
1 link)
doom-repo) (match-string 2 link)))
((user-error "Invalid doom-ref link: %S" link)))
)
)
(set-match-data saved-match-data t))
)
)
)
:face
(closure (t) (link)
(let ((link (+org-link-read-desc-at-point link)))
(if
(or (string-match
"^\\([^/]+\\(?:/[^/]+\\)?\\)?#\\([0-9]+\\(?:#.*\\)?\\)" link)
(string-match
"^\\([^/]+\\(?:/[^/]+\\)?@\\)?\\([a-z0-9]\\{7,\\}\\(?:#.*\\)?\\)" link))
'org-link 'error)
)
)
)
("doom-executable" :activate-func
+org-link--doom-executable-link-activate-fn :help-echo
+org-link-doom--help-echo-from-textprop :face
org-verbatim)
("doom-module" :follow
+org-link--doom-module-link-follow-fn
:activate-func
+org-link--doom-module-link-activate-fn :help-echo
+org-link-doom--help-echo-from-textprop)
("doom-package" :follow
+org-link--doom-package-link-follow-fn
:activate-func
+org-link--doom-package-link-activate-fn :help-echo
+org-link-doom--help-echo-from-textprop)
("cmd" :follow
(closure ((fn . describe-command)) (path _prefixarg)
(funcall (or (command-remapping fn) fn)
(or (intern-soft path) (user-error "Can't find
documentation for
%S" path)))
)
:activate-func +org-link--command-link-activate-fn :face
help-key-binding :help-echo
+org-link-doom--help-echo-from-textprop)
("face" :follow
(closure ((fn . describe-face)) (path _prefixarg)
(funcall (or (command-remapping fn) fn)
(or (intern-soft path) (user-error "Can't find
documentation for
%S" path)))
)
:activate-func +org-link--face-link-activate-fn :face
(font-lock-type-face underline))
("fn" :follow
(closure ((fn . describe-function)) (path _prefixarg)
(funcall (or (command-remapping fn) fn)
(or (intern-soft path) (user-error "Can't find
documentation for
%S" path)))
)
:activate-func +org-link--fn-link-activate-fn :face
(font-lock-function-name-face underline))
("var" :follow
(closure ((fn . describe-variable)) (path _prefixarg)
(funcall (or (command-remapping fn) fn)
(or (intern-soft path) (user-error "Can't find
documentation for
%S" path)))
)
:activate-func +org-link--var-link-activate-fn :face
(font-lock-variable-name-face underline))
("kbd" :follow
(closure (t) (ev) (interactive "e")
(minibuffer-message "%s"
(+org-link-doom--help-echo-from-textprop nil
(current-buffer)
(posn-point (event-start ev))))
)
:help-echo +org-link-doom--help-echo-from-textprop :face
help-key-binding)
("doom-modules" :complete
(closure
((dir-fn closure ((dir-var . doom-modules-dir)) nil
(symbol-value
dir-var)) (requires)
(key . "doom-modules"))
nil (if requires (mapc #'require (ensure-list
requires)))
(+org--relative-path (+org--read-link-path key
(funcall dir-fn))
(funcall dir-fn)))
:follow
(closure ((dir-fn closure ((dir-var .
doom-modules-dir)) nil
(symbol-value dir-var))) (link)
(org-link-open-as-file (expand-file-name link (funcall
dir-fn))
nil))
:face
(closure ((dir-fn closure ((dir-var .
doom-modules-dir)) nil
(symbol-value dir-var))) (link)
(let*
((path (expand-file-name link (funcall dir-fn)))
(option-index (string-match-p "::\\(.*\\)\\'" path))
(file-name
(substring path 0 option-index)))
(if (file-exists-p file-name) 'org-link 'error))
)
:requires nil)
("doom-docs" :complete
(closure
((dir-fn closure ((dir-var . doom-docs-dir)) nil
(symbol-value
dir-var)) (requires)
(key . "doom-docs"))
nil (if requires (mapc #'require (ensure-list
requires)))
(+org--relative-path (+org--read-link-path key
(funcall dir-fn))
(funcall dir-fn)))
:follow
(closure ((dir-fn closure ((dir-var . doom-docs-dir))
nil
(symbol-value dir-var))) (link)
(org-link-open-as-file (expand-file-name link (funcall
dir-fn))
nil))
:face
(closure ((dir-fn closure ((dir-var . doom-docs-dir))
nil
(symbol-value dir-var))) (link)
(let*
((path (expand-file-name link (funcall dir-fn)))
(option-index (string-match-p "::\\(.*\\)\\'" path))
(file-name
(substring path 0 option-index)))
(if (file-exists-p file-name) 'org-link 'error))
)
:requires nil)
("doom" :complete
(closure
((dir-fn closure ((dir-var . doom-emacs-dir)) nil
(symbol-value
dir-var)) (requires) (key . "doom"))
nil (if requires (mapc #'require (ensure-list
requires)))
(+org--relative-path (+org--read-link-path key
(funcall dir-fn))
(funcall dir-fn)))
:follow
(closure ((dir-fn closure ((dir-var . doom-emacs-dir))
nil
(symbol-value dir-var))) (link)
(org-link-open-as-file (expand-file-name link (funcall
dir-fn))
nil))
:face
(closure ((dir-fn closure ((dir-var . doom-emacs-dir))
nil
(symbol-value dir-var))) (link)
(let*
((path (expand-file-name link (funcall dir-fn)))
(option-index (string-match-p "::\\(.*\\)\\'" path))
(file-name
(substring path 0 option-index)))
(if (file-exists-p file-name) 'org-link 'error))
)
:requires nil)
("org" :complete
(closure
((dir-fn closure ((dir-var . org-directory)) nil
(symbol-value
dir-var)) (requires) (key . "org"))
nil (if requires (mapc #'require (ensure-list
requires)))
(+org--relative-path (+org--read-link-path key
(funcall dir-fn))
(funcall dir-fn)))
:follow
(closure ((dir-fn closure ((dir-var . org-directory))
nil
(symbol-value dir-var))) (link)
(org-link-open-as-file (expand-file-name link (funcall
dir-fn))
nil))
:face
(closure ((dir-fn closure ((dir-var . org-directory))
nil
(symbol-value dir-var))) (link)
(let*
((path (expand-file-name link (funcall dir-fn)))
(option-index (string-match-p "::\\(.*\\)\\'" path))
(file-name
(substring path 0 option-index)))
(if (file-exists-p file-name) 'org-link 'error))
)
:requires nil)
("attachment" :image-data-fun +org-image-file-data-fn
:follow
org-attach-follow :complete
org-attach-complete-link)
("file+sys") ("file+emacs") ("shell" :follow
org-link--open-shell)
("news" :follow #[514 "\301\300\302Q\"\207" ["news"
browse-url
":"] 6 "\n\n(fn URL ARG)"])
("mailto" :follow #[514 "\301\300\302Q\"\207" ["mailto"
browse-url ":"] 6 "\n\n(fn URL ARG)"])
("https" :follow #[514 "\301\300\302Q\"\207" ["https"
browse-url ":"] 6 "\n\n(fn URL ARG)"]
:image-data-fun +org-http-image-data-fn)
("http" :follow #[514 "\301\300\302Q\"\207" ["http"
browse-url
":"] 6 "\n\n(fn URL ARG)"]
:image-data-fun +org-http-image-data-fn)
("ftp" :follow #[514 "\301\300\302Q\"\207" ["ftp"
browse-url
":"] 6 "\n\n(fn URL ARG)"])
("help" :follow org-link--open-help :store
org-link--store-help)
("file" :complete org-link-complete-file :face
(closure (t) (path)
(if
(or (if (featurep :system 'windows) (string-prefix-p
"//" path))
(file-remote-p path)
(if (featurep :system 'windows) (string-prefix-p
"\\\\" path))
(file-exists-p path))
'org-link '(warning org-link))
)
)
("elisp" :follow org-link--open-elisp))
org-metaup-hook '(org-babel-load-in-session-maybe)
org-startup-with-inline-images t
org-imenu-depth 6
org-download-link-format-function 'org-download-link-format-function-default
org-display-remote-inline-images 'download
org-outline-path-complete-in-steps nil
org-special-ctrl-a/e t
org-tags-column 0
org-src-lang-modes '(("md" . markdown) ("C" . c) ("C++" . c++) ("asymptote" .
asy)
("beamer" . latex)
("calc" . fundamental) ("cpp" . c++) ("ditaa" . artist)
("desktop" .
conf-desktop)
("dot" . fundamental) ("elisp" . emacs-lisp) ("ocaml" .
tuareg)
("screen" . shell-script)
("sqlite" . sql) ("toml" . conf-toml) ("shell" . sh)
("ash" . sh)
("sh" . sh) ("bash" . sh)
("jsh" . sh) ("bash2" . sh) ("dash" . sh) ("dtksh" . sh)
("ksh" .
sh) ("es" . sh) ("rc" . sh)
("itcsh" . sh) ("tcsh" . sh) ("jcsh" . sh) ("csh" . sh)
("ksh88" .
sh) ("oash" . sh) ("pdksh" . sh)
("mksh" . sh) ("posix" . sh) ("wksh" . sh) ("wsh" . sh)
("zsh" . sh) ("rpm" . sh))
org-clock-history-length 20
org-agenda-block-separator 8411
org-id-locations-file-relative t
org-archive-subtree-save-file-p t
org-list-allow-alphabetical t
)
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