Johannes Rainer <johannes.rai...@gmail.com> writes: > thanks for your hint. I checked Sys.getenv before and after the > failing code, but LC_ALL was always properly set. I’m afraid my > problem relates to some Mac LLVM and GCC gfortran compiler thing, > since I’m using a R version compiled against the Mac Accelerate > framework (vecLib)… it is just so strange that I only get the error in > Emacs org-mode upon exporting the org file, but not, if I evaluate > each code chunk separately.
But are you using .C, .Fortran or Rcpp in your code-block? If not, why would your compilers matter? (I'm not an expert on R internals, so my comment may be naïve). As a short turn solution try to add this to the top of your file #+PROPERTY: session *R* These days you might even get away with just #+PROPERTY: session I'm not sure. This should run your code from the same session. [This should be equivalent to adding :session to babel blocks, but check the manual if it ain't working] > to set all environment variables I’m using the “exec-path-from-shell” > extension, so, all environment settings from the shell are available > in Emacs. Are you exporting async or "normally"? If async, do you get the error when exporting "normally"? —Rasmus -- Hvor meget poesi tror De kommer ud af et glas isvand?
