"Charles C. Berry" <ccbe...@ucsd.edu> writes: > On Thu, 18 Jun 2015, Andreas Leha wrote: > >> Hi Chuck, >> >> [snip: all context about workflows for R projects] >> >>> For example, the bioConductor package geneRxCluster [1] comes from an >>> Org mode document that contains the C and R code as src blocks and a >>> subtree with the vignette (Using geneRxCluster) that analyzes data, >>> produces graphics, etc. tangle-ing the src blocks and exporting the >>> vignette creates the package. >>> >> >> I'd love to see that org document, but I do not seem to be able to find >> it. Is it available anywhere? > > Andreas, > > It is now, or at least the relevant subset of it is at: > > https://github.com/chasberry/geneRx/blob/master/Rpackage.org > > It is best viewed in Org mode as there are internal links that github > does not honor (so you get `404 This is not...' messages if you click > on them). > > And it is best to use those internal links as the file was not > designed to be read from top to bottom - it has lots of snippets I > used to develop and check code along the way that are not in the > actual package and I have left them in place. >
That is awesome! Really appreciated! I will take a good look. Thanks, Andreas
