Daniel Barker wrote: > One request. Could EMBOSS please add a full global alignment program or > option? Needle allows 'overhanging ends' with no penalty. > > I don't think this makes sense. Or at least, it definitely does not make > sense for all applications. Generally with pairwise alignment of > proteins I want either local alignment (e.g. water), or full global > alignment which isn't available in EMBOSS.
Thanks for the suggestion. Would you be happy with an options for needle to penalise gaps at the end, or a separate application (if so, we need to invent a new name). regards, Peter Rice _______________________________________________ EMBOSS mailing list [email protected] http://lists.open-bio.org/mailman/listinfo/emboss
