Dear Phil,
On 26/04/2010 13:47, Philip H. Jones wrote:
Hi
I have a large number of .scf files that I need to batch convert to
fasta format. I thought that abiview would be able to perform this
function but I cannot get abiview to read the .scf files (although
various sources on the internet suggest that it should be able to do
so). It reads and displays .ab1 files with no problems. The webpage
describing input formats
(http://emboss.sourceforge.net/docs/themes/SequenceFormats.html) doesn't
mention scf. Is there an EMBOSS application that would convert .scf to
.fa? Any help would be greatly appreciated. I am running Mac OSX 10.5.8
with EMBOSS 6.1.0-4 installed via fink.
We can read .abi files (we have some extensions for the next release to
cover abi format in more detail).
I will pick up some scf files and check what the difference is. We have
not tried them before.
Any other formats we can usefully cover?
regards,
Peter Rice
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