Hi, I would like to translate yeast Candida albicans nucleotide sequence into protein sequence using transeq. However I got confused with the '-table' values.
The taxonomy information for candidia is: *Lineage*<http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Undef&id=160764&lvl=3&lin=s&keep=1&srchmode=1&unlock> (full): root<http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Root&id=1&lvl=3&lin=f&keep=1&srchmode=1&unlock>; cellular organisms<http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Undef&id=131567&lvl=3&lin=f&keep=1&srchmode=1&unlock>; Eukaryota<http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Undef&id=2759&lvl=3&lin=f&keep=1&srchmode=1&unlock>; Fungi/Metazoa group<http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Undef&id=33154&lvl=3&lin=f&keep=1&srchmode=1&unlock>; Metazoa<http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Undef&id=33208&lvl=3&lin=f&keep=1&srchmode=1&unlock>; Eumetazoa<http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Undef&id=6072&lvl=3&lin=f&keep=1&srchmode=1&unlock>; Bilateria<http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Undef&id=33213&lvl=3&lin=f&keep=1&srchmode=1&unlock>; Coelomata<http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Undef&id=33316&lvl=3&lin=f&keep=1&srchmode=1&unlock>; Deuterostomia<http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Undef&id=33511&lvl=3&lin=f&keep=1&srchmode=1&unlock>; Chordata<http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Undef&id=7711&lvl=3&lin=f&keep=1&srchmode=1&unlock>; Craniata<http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Undef&id=89593&lvl=3&lin=f&keep=1&srchmode=1&unlock>; Vertebrata<http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Undef&id=7742&lvl=3&lin=f&keep=1&srchmode=1&unlock>; Gnathostomata<http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Undef&id=7776&lvl=3&lin=f&keep=1&srchmode=1&unlock>; Teleostomi<http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Undef&id=117570&lvl=3&lin=f&keep=1&srchmode=1&unlock>; Euteleostomi<http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Undef&id=117571&lvl=3&lin=f&keep=1&srchmode=1&unlock>; Actinopterygii<http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Undef&id=7898&lvl=3&lin=f&keep=1&srchmode=1&unlock>; Actinopteri<http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Undef&id=186623&lvl=3&lin=f&keep=1&srchmode=1&unlock>; Neopterygii<http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Undef&id=41665&lvl=3&lin=f&keep=1&srchmode=1&unlock>; Teleostei<http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Undef&id=32443&lvl=3&lin=f&keep=1&srchmode=1&unlock>; Elopocephala<http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Undef&id=186624&lvl=3&lin=f&keep=1&srchmode=1&unlock>; Clupeocephala<http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Undef&id=186625&lvl=3&lin=f&keep=1&srchmode=1&unlock>; Otocephala<http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Undef&id=186634&lvl=3&lin=f&keep=1&srchmode=1&unlock>; Ostariophysi<http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Undef&id=32519&lvl=3&lin=f&keep=1&srchmode=1&unlock>; Otophysi<http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Undef&id=186626&lvl=3&lin=f&keep=1&srchmode=1&unlock>; Cypriniphysi<http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Undef&id=186627&lvl=3&lin=f&keep=1&srchmode=1&unlock>; Cypriniformes<http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Undef&id=7952&lvl=3&lin=f&keep=1&srchmode=1&unlock>; Cyprinoidea<http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Undef&id=30727&lvl=3&lin=f&keep=1&srchmode=1&unlock>; Cyprinidae<http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Undef&id=7953&lvl=3&lin=f&keep=1&srchmode=1&unlock> (retrieved from NCBI). Based on the above information which '-table' value is best/suitable? Nermin _______________________________________________ EMBOSS mailing list EMBOSS@lists.open-bio.org http://lists.open-bio.org/mailman/listinfo/emboss