Dear EMBOSS developers, I often look for a sequence format that would put all the information on a single line easy to parse with a Perl or sed filter, and was wondering if – in the absence of a better alternative – it would be possible for EMBOSS to include the SAM format as a sequence format.
http://samtools.sourceforge.net/samtools.shtml It may look heretic at a first sight, but I see that other projects are also using SAM as format to store sequences with qualities: http://picard.sourceforge.net/command-line-overview.shtml#FastqToSam Have a nice day, -- Charles Plessy Tsurumi, Kanagawa, Japan _______________________________________________ EMBOSS mailing list EMBOSS@lists.open-bio.org http://lists.open-bio.org/mailman/listinfo/emboss
