On 18/06/2010 13:07, Tiwari, Bela wrote:
Dear all,
I have a set of accession numbers and I want to retrieve the organism that the
sequence is associated with - i.e. the content of the OS line in an embl file.
I don't need the taxonomic id, and I don't need to start traversing taxonomy
trees. I want to do this by accessing remote databases (via srs, as configured
in my emboss.defaults file), rather than indexing databases locally. So the
output I want would be a text mapping like:
accession : species
where species is taken from the OS line of a database entry.
This will be in EMBOSS 6.3.0 as:
infoseq -only -accession -organism (with no ':' in the output)
For now it has the full text from the OS line, soon we may be able to
select one species name instead of a list.
Hope this will help
Peter
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