Thank you for your help. Really strange. Following situation: # ls /usr/share/EMBOSS/ emboss.default # ls /usr/local/share/EMBOSS/ acd data doc emboss.default.template jemboss plstnd5.fnt plxtnd5.fnt test
Then i looked into /usr/share/EMBOSS/emboss.default, but there is no variable EMBOSS_ACDROOT set. Could it be set elsewhere? Thanks, Wolfgang 2011/1/12 <a...@ebi.ac.uk>: > Well if you've installed to /usr/local then it should be > looking for that file in /usr/local/share/EMBOSS/acd/embossversion.acd > > As it's looking under /usr/share... my first suspicion would be that > you've set an environment variable incorrectly (e.g. > EMBOSS_ACDROOT). You should not really need to set any EMBOSS > environment variables, it should work OK without. So, if > you have set any such envvars then try unsetting them and run > the program again. > > Alan > > > > >> Thank you, that did the job! But now i have an other error for which i >> also can't find anything in the web: >> >> # embossversion >> Error: File /usr/share/EMBOSS/acd/embossversion.acd line 0: ACD file not >> opened >> >> Can you help me again? >> >> Thanks, >> Wolfgang >> >> 2011/1/12 <a...@ebi.ac.uk>: >>> Hello Wolfgang, >>> >>> On OpenSuse that error usually means you've installed EMBOSS into >>> /usr/local such that the libraries are in /usr/local/lib. That >>> library directory is cached on OpenSuse so all you should need to do is, >>> with privilege, type "/sbin/ldconfig" to rebuild the cache. >>> >>> HTH >>> >>> Alan >>> >>> >>> >>>> Hello, >>>> >>>> I installed stable EMBOSS 6.3.1 on OpenSuse 11.3. >>>> >>>> ./configure, make and make install ran without an error. But when I >>>> try to run an EMBOSS app, i get the following error: >>>> >>>> # embossversion >>>> embossversion: error while loading shared libraries: libnucleus.so.6: >>>> cannot open shared object file: No such file or directory >>>> >>>> I think the attached output could help. Does anyone know what is wrong >>>> with my installation? Do you need additional data? >>>> >>>> Thanks, >>>> Wolfgang >>>> >>>> # ldd $(which embossversion) >>>> linux-gate.so.1 => (0xffffe000) >>>> libnucleus.so.6 => not found >>>> libacd.so.6 => not found >>>> libajaxdb.so.6 => not found >>>> libensembl.so.6 => not found >>>> libajaxg.so.6 => not found >>>> libajax.so.6 => not found >>>> libezlib.so.1 => not found >>>> libeexpat.so.1 => not found >>>> libepcre.so.7 => not found >>>> libeplplot.so.3 => not found >>>> libpq.so.5 => /usr/lib/libpq.so.5 (0xb77a4000) >>>> libX11.so.6 => /usr/lib/libX11.so.6 (0xb7669000) >>>> libgd.so.2 => /usr/lib/libgd.so.2 (0xb7622000) >>>> libpng14.so.14 => /usr/lib/libpng14.so.14 (0xb75f6000) >>>> libz.so.1 => /lib/libz.so.1 (0xb75e1000) >>>> libm.so.6 => /lib/libm.so.6 (0xb75b7000) >>>> libc.so.6 => /lib/libc.so.6 (0xb744c000) >>>> libssl.so.1.0.0 => /lib/libssl.so.1.0.0 (0xb73f5000) >>>> libcrypto.so.1.0.0 => /lib/libcrypto.so.1.0.0 (0xb7255000) >>>> libkrb5.so.3 => /usr/lib/libkrb5.so.3 (0xb718d000) >>>> libcom_err.so.2 => /lib/libcom_err.so.2 (0xb7187000) >>>> libgssapi_krb5.so.2 => /usr/lib/libgssapi_krb5.so.2 >>>> (0xb7150000) >>>> libldap_r-2.4.so.2 => /usr/lib/libldap_r-2.4.so.2 (0xb7100000) >>>> libpthread.so.0 => /lib/libpthread.so.0 (0xb70e5000) >>>> libxcb.so.1 => /usr/lib/libxcb.so.1 (0xb70c5000) >>>> libdl.so.2 => /lib/libdl.so.2 (0xb70bf000) >>>> libXpm.so.4 => /usr/lib/libXpm.so.4 (0xb70ac000) >>>> libjpeg.so.8 => /usr/lib/libjpeg.so.8 (0xb7073000) >>>> libfontconfig.so.1 => /usr/lib/libfontconfig.so.1 (0xb703d000) >>>> libfreetype.so.6 => /usr/lib/libfreetype.so.6 (0xb6fb6000) >>>> /lib/ld-linux.so.2 (0xb77e3000) >>>> libk5crypto.so.3 => /usr/lib/libk5crypto.so.3 (0xb6f8d000) >>>> libkrb5support.so.0 => /usr/lib/libkrb5support.so.0 >>>> (0xb6f84000) >>>> libkeyutils.so.1 => /lib/libkeyutils.so.1 (0xb6f80000) >>>> libresolv.so.2 => /lib/libresolv.so.2 (0xb6f69000) >>>> liblber-2.4.so.2 => /usr/lib/liblber-2.4.so.2 (0xb6f59000) >>>> libsasl2.so.2 => /usr/lib/libsasl2.so.2 (0xb6f3d000) >>>> libXau.so.6 => /usr/lib/libXau.so.6 (0xb6f39000) >>>> libexpat.so.1 => /lib/libexpat.so.1 (0xb6f0f000) >>>> _______________________________________________ >>>> EMBOSS mailing list >>>> EMBOSS@lists.open-bio.org >>>> http://lists.open-bio.org/mailman/listinfo/emboss >>>> >>> >>> >>> >> > > > _______________________________________________ EMBOSS mailing list EMBOSS@lists.open-bio.org http://lists.open-bio.org/mailman/listinfo/emboss