On 14/02/2011 23:35, Marvin Stodolsky wrote:
This is elementary I’m sure, but I’ve been unable to work out the
syntax from the documentation.
More minor issue.
When using infoseq to extract all the fasta Headers from a sequence
Repository, the GeneBegin..GeneEnd (like 234466..234589) often fails to
come as a uniform field/fields in a resultant spreadsheet. Is there a Fix
for this?
I don't see the genebegin and geneend in EMBOSS infoseq output. Are they
part of the sequence ID in the FASTA file?
You can use a delimiter between items for infoseq using:
-nocolumn
on the command line.
For import into a spreadsheet you can set the delimiter to be tab with:
-nocolumn -delimiter "\t"
on the command line. That should then import nicely into a spreadsheet.
Hope that helps
Peter Rice
EMBOSS Team
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