On 2011-03-10 17:26, Wolfgang Rumpf wrote:
So as I understand it my options are:
1. Boot with an older kernel - probably the latest one from 10.4, if it works
with 10.10;
2. Recompile EMBOSS myself;
3. Download and install the 11.04 (unreleased) Emboss/Embassy installs;
4. Wait for 11.04 to come out
Of all of these the "simplest" (other than just waiting) would probably be to
try to boot with an older kernel - I don't want to bring the rest of the EMBOSS system
down for an extended time period, perhaps very extended if the compilation/install
doesn't go as planned.
Sound about right?
The error message complains about missing library file libnucleus.so.6
which was probably removed in update as there was no dependency on it
(within the package lists). So here's a way to fix it:
- go to packages.ubuntu.com and search for a package with file called
libnucleus.so.6
- get result which tells you that it is in package libnucleus6
- install that named package with your favourite tool (for example
apt-get)
Wolfgang
Dr. Wolfgang Rumpf
Product Specialist, Rescentris Inc.
--------------------------------------------------------
wolfgang.ru...@rescentris.com
Mobile - (614) 638-6797
Skype - wolfgang.rumpf
On Mar 9, 2011, at 8:37 PM, Charles Plessy wrote:
Le Wed, Mar 09, 2011 at 07:48:41PM -0500, Marvin Stodolsky a écrit :
RE: undefined symbol: ajSeqdbInit
While not an expert at all, on Emboss code,
this type of error is typically due to (Emboss) binaries Not Yet
being compiled with the newer linux-header resources. Pending that
compilation by the Emboss maintenance team, if you run the compile
from Emboss source code on your own Ubuntu 10.10 system, all will
likely be OK.
Dear Wolfgang,
you can also give a try to the emboss and embassy-phylip from 11.04 Ubuntu
distribution. If you can install them on 10.10, they should work well, and
they are up to date.
http://packages.ubuntu.com/natty/emboss
http://packages.ubuntu.com/natty/embassy-phylip
Have a nice day,
--
Charles Plessy
Debian Med packaging team
http://www.debian.org/devel/debian-med
Tsurumi, Kanagawa, Japan
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Henrikki Almusa
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