On 05/12/2011 12:52, Hotz, Hans-Rudolf wrote:
"cirdna" and "lindna" are nice and do their job most of the time. In my
view, the problem is the input file format. Maybe a converter from
embl/genbank to *.crip or *.linp would be a good start? Or adding the those
formats to the output options of seqret?
We do already support "draw" an a report output format.
If we add it as a feature output format you can use featcopy (or seqret
-feat) to create a cirdna or lindna input file.
We can then work on the feature format to add extra information by
feature type.
We could also add an application to merge a set of feature inputs so you
could combine genbank/embl files with restriction map output, then use
the results as input.
I will see what I can do for the next release.
Thanks for the very helpful suggestions
Peter Rice
EMBOSS Team
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