Hi Afif, There are some features in EMBOSS, which are not easy to find 😊. If you use e.g. "transeq -help -verbose", this will then show also the Associated and General qualifiers and there you will see the -filter option.
David -----Ursprüngliche Nachricht----- Von: EMBOSS <[email protected]> Im Auftrag von Afif Elghraoui Gesendet: 22 June 2022 09:55 An: [email protected] Betreff: Re: [EMBOSS] contributing to emboss Wow, thank you Markus and David. I never noticed that option on the tool -help menus, but this changes everything :) thanks and regards Afif On 6/22/22 00:52, David Bauer wrote: > Hi All, > > If you want the -filter as default, this can be done by setting an > environment variable: > setenv EMBOSS_FILTER 1 > > Best, > David > > -----Ursprüngliche Nachricht----- > Von: EMBOSS <[email protected]> Im Auftrag von > Kiefer, Dr. Markus > Gesendet: 22 June 2022 09:11 > An: [email protected] > Betreff: Re: [EMBOSS] contributing to emboss > > Hi Afif, > > do you know about the -filter option? But I agree, that should be the default. > > I think the retrieval functionality is in need of an overhaul. There should > be an easier way to access modern Genbank for example, while e.g. SRS and GCG > are much less important, meanwhile. > > Best, > Markus > _______________________________________________ EMBOSS mailing list [email protected] https://eur03.safelinks.protection.outlook.com/?url=https%3A%2F%2Fmailman.open-bio.org%2Fmailman%2Flistinfo%2Femboss&data=05%7C01%7C%7C3b5156e927d04f738dd508da54249205%7Cfcb2b37b5da0466b9b830014b67a7c78%7C0%7C0%7C637914813287911847%7CUnknown%7CTWFpbGZsb3d8eyJWIjoiMC4wLjAwMDAiLCJQIjoiV2luMzIiLCJBTiI6Ik1haWwiLCJXVCI6Mn0%3D%7C3000%7C%7C%7C&sdata=%2F2Mh5KbUeL4qgqDfHrGZxJc%2B3I9GnR0ld%2BON2%2BTWx4U%3D&reserved=0 _______________________________________________ EMBOSS mailing list [email protected] https://mailman.open-bio.org/mailman/listinfo/emboss
