I posted this a little bit ago but decided to repost adding some helpful
info.
I had my beaglebone-linuxcnc system running smoothly until yesterday it
just completely decided to stop working.
I just realized the series of events that caused it to stop working.
I wanted to see what it would look like loading other GUI's instead of axis.
I may have even tried using the touchy gui.
could this have messed up settings inside of the linuxcnc build that is
keeping it from loading linuxcnc anymore even with the gui set back to axis?

this is what I get when I try to load linuxcnc now.  I have tried loading
all the different ini file configurations to see if anything works and
everything gives me the same error now.


linuxcnc@arm:~$ linuxcnc
LINUXCNC - 2.6.0~pre
Machine configuration directory is
'/home/linuxcnc/linuxcnc/configs/ARM/BeagleBone/K9/Shapeoko'
Machine configuration file is 'GPIO-Driven.ini'
Starting LinuxCNC...
cannot determine if this user is a member of group xenomai: Operation not
permitted
rtapi_msgd startup failed - aborting
rtapi_app startup failed - aborting
io started
Xenomai: binding failed: Operation not permitted.
halcmd loadusr io started
Xenomai: binding failed: Operation not permitted.
Shutting down and cleaning up LinuxCNC...
Xenomai: binding failed: Operation not permitted.
Xenomai: binding failed: Operation not permitted.
Xenomai: binding failed: Operation not permitted.
Xenomai: binding failed: Operation not permitted.
Xenomai: binding failed: Operation not permitted.
Xenomai: binding failed: Operation not permitted.
Xenomai: binding failed: Operation not permitted.
cannot determine if this user is a member of group xenomai: Operation not
permitted
Xenomai: binding failed: Operation not permitted.
Xenomai: binding failed: Operation not permitted.
Xenomai: binding failed: Operation not permitted.
Xenomai: binding failed: Operation not permitted.
Xenomai: binding failed: Operation not permitted.
Cleanup done


linuxcnc_debug.txt shows:
Can not find -sec MOT -var MOT -num 1
Can not find -sec IO -var IO -num 1
Can not find -sec LINUXCNC -var NML_FILE -num 1
Can not find -sec EMC -var NML_FILE -num 1
6904
  PID TTY      STAT   TIME COMMAND
Stopping realtime threads
Unloading hal components


linuxcnc_print.txt shows:
RUN_IN_PLACE=yes
LINUXCNC_DIR=
LINUXCNC_BIN_DIR=/home/linuxcnc/linuxcnc/bin
LINUXCNC_TCL_DIR=/home/linuxcnc/linuxcnc/tcl
LINUXCNC_SCRIPT_DIR=
LINUXCNC_RTLIB_DIR=/home/linuxcnc/linuxcnc/rtlib
LINUXCNC_CONFIG_DIR=
LINUXCNC_LANG_DIR=/home/linuxcnc/linuxcnc/src/objects
INIVAR=inivar
HALCMD=halcmd
LINUXCNC_EMCSH=/usr/bin/wish8.5
INIFILE=/home/linuxcnc/linuxcnc/configs/ARM/BeagleBone/K9/Shapeoko/GPIO-Driven.ini
PARAMETER_FILE=pru-stepper.var
TASK=milltask
HALUI=
DISPLAY=axis
Starting LinuxCNC server program: linuxcncsvr
Loading Real Time OS, RTAPI, and HAL_LIB modules
Starting LinuxCNC IO program: io
Killing task linuxcncsvr, PID=6904
Removing HAL_LIB, RTAPI, and Real Time OS modules
Removing NML shared memory segments

-- 
Josiah Morgan, P.E.
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