Putting a Neutral Density filter on an f2.8 lens reduces the light 
reaching the auto focus sensor, it does not necessarily degrade auto 
focus performance to the level of an f5.6 lens.

Auto focus is affected by a variety of factors including depth of 
field, light reaching the sensor, sharpness of the lens, contrast of 
the subject, etc.

My experience has been that Depth of field of the lens is quite 
important.  With a small depth of field, slight changes to focus make 
a big difference.  With a deep depth of field, small changes in focus 
make a much less noticeable difference.

Many people think that a fast lens is better for auto focus because 
it allows more light to reach the auto focus sensor.  I think the 
real reason it's better for auto focus is that it has a shallow depth 
of field.


Adding a Neutral Density filter or polarizer to a fast lens will not 
affect the maximum f stop.  An f2.8 lens will still be an f2.8 lens 
as far as depth of field is concerned.   As long as there is an 
abundance of light, adding the filter should not have a significant 
effect on auto focus.

Adding a teleconverter is a different matter.   Putting a 2x 
teleconvertor on an f2.8 lens presents an f5.6 lens system to the 
camera.   This f5.6 lens system has a deeper depth of field then an 
f2.8 lens, and hence is harder on the auto focus system.


-Michael Fryd

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