Hi,
I just upgraded R to version 3.3.2 on a Mac OS X system. I suspect something
may have gone wrong with the installation (despite a ‘successfully installed’
message) because the R.App is nowhere to be found.
Nevertheless, I can open R in ESS, which how I always use it. The problem
though, is I can’t install packages from the R command line within ESS. Here is
a sample error message:
> install.packages("rjags")
--- Please select a CRAN mirror for use in this session ---
trying URL
'https://vps.fmvz.usp.br/CRAN/bin/macosx/mavericks/contrib/3.3/rjags_4-6.tgz'
<https://vps.fmvz.usp.br/CRAN/bin/macosx/mavericks/contrib/3.3/rjags_4-6.tgz'>
Content type 'application/x-gzip' length 249529 bytes (243 KB)
==================================================
downloaded 243 KB
The downloaded binary packages are in
/var/folders/kf/zkk64rtj5197pzwq94qfls0w0000gn/T//RtmpuSb7P1/downloaded_packages
> library(rjags)
Loading required package: coda
Error : .onLoad failed in loadNamespace() for 'rjags', details:
call: dyn.load(file, DLLpath = DLLpath, ...)
error: unable to load shared object
'/Library/Frameworks/R.framework/Versions/3.3/Resources/library/rjags/libs/rjags.so':
dlopen(/Library/Frameworks/R.framework/Versions/3.3/Resources/library/rjags/libs/rjags.so,
10): Library not loaded: /usr/local/lib/libjags.4.dylib
Referenced from:
/Library/Frameworks/R.framework/Versions/3.3/Resources/library/rjags/libs/rjags.so
Reason: image not found
Error: package or namespace load failed for ‘rjags’
This happens with other packages as well. Does anyone know what may be going on?
Thank you,
Gonçalo
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