Jacob, thanks for your help.
Here's the output. I don't understand much of it, but the first mention
of anything which seems germane is of "poly-markdown-+r-mode":
===============================================
Debugger entered--Lisp error: "Package cl is deprecated"
message("%s" "Package cl is deprecated")
#f(compiled-function (msg) #<bytecode 0x1fd0c5464193>)("Package cl is
deprecated")
apply(#f(compiled-function (msg) #<bytecode 0x1fd0c5464193>) "Package
cl is deprecated")
timer-event-handler([t 0 0 0 nil #f(compiled-function (msg)
#<bytecode 0x1fd0c5464193>) ("Package cl is deprecated") idle 0])
recursive-edit()
debug(error (cl-no-applicable-method clone nil))
signal(cl-no-applicable-method (clone nil))
cl-no-applicable-method(#s(cl--generic :name clone :dispatches ((0
#s(cl--generic-generalizer :name eieio--generic-generalizer :priority 50
:tagcode-function cl--generic-struct-tag :specializers-function
#f(compiled-function (tag &rest _) #<bytecode 0x155db7511469>))
#s(cl--generic-generalizer :name cl--generic-t-generalizer :priority 0
:tagcode-function #f(compiled-function (name &rest _) #<bytecode
0x1fd0c5305c27>) :specializers-function #f(compiled-function (tag &rest
_) #<bytecode 0x1fd0c5305c17>)))) :method-table (#s(cl--generic-method
:specializers (eieio-named) :qualifiers nil :uses-cnm t :function
#f(compiled-function (obj &rest params) "Clone OBJ, initializing
`:parent' to OBJ.\nAll slots are unbound, except those initialized with
PARAMS." #<bytecode 0x155db755ec35>)) #s(cl--generic-method
:specializers (eieio-instance-inheritor) :qualifiers nil :uses-cnm t
:function #f(compiled-function (obj &rest params) "Clone OBJ,
initializing `:parent' to OBJ.\nAll slots are unbound, except those
initialized with PARAMS." #<bytecode 0x155db74f9af1>))
#s(cl--generic-method :specializers (eieio-default-superclass)
:qualifiers nil :uses-cnm nil :function #f(compiled-function (obj &rest
params) "Make a copy of OBJ, and then apply PARAMS." #<bytecode
0x155db7503511>))) :options nil) nil)
apply(cl-no-applicable-method #s(cl--generic :name clone :dispatches
((0 #s(cl--generic-generalizer :name eieio--generic-generalizer
:priority 50 :tagcode-function cl--generic-struct-tag
:specializers-function #f(compiled-function (tag &rest _) #<bytecode
0x155db7511469>)) #s(cl--generic-generalizer :name
cl--generic-t-generalizer :priority 0 :tagcode-function
#f(compiled-function (name &rest _) #<bytecode 0x1fd0c5305c27>)
:specializers-function #f(compiled-function (tag &rest _) #<bytecode
0x1fd0c5305c17>)))) :method-table (#s(cl--generic-method :specializers
(eieio-named) :qualifiers nil :uses-cnm t :function #f(compiled-function
(obj &rest params) "Clone OBJ, initializing `:parent' to OBJ.\nAll slots
are unbound, except those initialized with PARAMS." #<bytecode
0x155db755ec35>)) #s(cl--generic-method :specializers
(eieio-instance-inheritor) :qualifiers nil :uses-cnm t :function
#f(compiled-function (obj &rest params) "Clone OBJ, initializing
`:parent' to OBJ.\nAll slots are unbound, except those initialized with
PARAMS." #<bytecode 0x155db74f9af1>)) #s(cl--generic-method
:specializers (eieio-default-superclass) :qualifiers nil :uses-cnm nil
:function #f(compiled-function (obj &rest params) "Make a copy of OBJ,
and then apply PARAMS." #<bytecode 0x155db7503511>))) :options nil) nil)
#f(compiled-function (&rest args) #<bytecode 0x155db79c1179>)(nil)
apply(#f(compiled-function (&rest args) #<bytecode 0x155db79c1179>)
nil nil)
clone(nil)
(let ((config (clone poly-markdown+r-mode))) (eieio-oset config
':minor-mode 'poly-gfm+r-mode) (pm-initialize config))
(if pm/polymode nil (let ((config (clone poly-markdown+r-mode)))
(eieio-oset config ':minor-mode 'poly-gfm+r-mode) (pm-initialize config)))
(let ((last-message (current-message))) (if pm/polymode nil (let
((config (clone poly-markdown+r-mode))) (eieio-oset config ':minor-mode
'poly-gfm+r-mode) (pm-initialize config))) (setq poly-gfm+r-mode t)
(run-hooks 'poly-gfm+r-mode-hook) (if (and (called-interactively-p 'any)
(or (null (current-message)) (not (equal last-message
(current-message))))) (progn (message "gfm+r polymode enabled")))
(force-mode-line-update))
(if poly-gfm+r-mode nil (let ((last-message (current-message))) (if
pm/polymode nil (let ((config (clone poly-markdown+r-mode))) (eieio-oset
config ':minor-mode 'poly-gfm+r-mode) (pm-initialize config))) (setq
poly-gfm+r-mode t) (run-hooks 'poly-gfm+r-mode-hook) (if (and
(called-interactively-p 'any) (or (null (current-message)) (not (equal
last-message (current-message))))) (progn (message "gfm+r polymode
enabled"))) (force-mode-line-update)))
poly-gfm+r-mode()
set-auto-mode-0(poly-gfm+r-mode nil)
set-auto-mode()
normal-mode(t)
after-find-file(nil t)
find-file-noselect-1(#<buffer Prob_17_Page_295.Rmd>
"~/Documents/Dan/Math_Stats/Prob_17_Page_295.Rmd" nil nil
"~/Documents/Dan/Math_Stats/Prob_17_Page_295.Rmd" (69338481 2067))
find-file-noselect("/home/kevin/Documents/Dan/Math_Stats/Prob_17_Page_...")
#f(compiled-function (displayable-buffers dir line column name)
#<bytecode 0x1fd0c5450cb9>)((nil) "~/Documents/Dan/Math_Stats/" (0) (0)
"Prob_17_Page_295.Rmd")
command-line-1(("Prob_17_Page_295.Rmd"))
command-line()
normal-top-level()
========================================
Thanks for any ongoing advice.
-Kevin
On 4/23/23 13:34, Jacob Kasper wrote:
> For package cl is depreciated you can read this thread. I don't think
> this is causing any issues with markdown.
> https://www.reddit.com/r/emacs/comments/zslyem/package_cl_is_deprecated_debugging/
>
> <https://www.reddit.com/r/emacs/comments/zslyem/package_cl_is_deprecated_debugging/>
>
> On Sun, Apr 23, 2023, 17:16 Kevin Zembower via ESS-help
> <ess-help@r-project.org <mailto:ess-help@r-project.org>> wrote:
>
> Tyler, thanks again for your help.
>
> I'm sorry to burden you with my problems, but I'm stuck again.
>
> I think I have everything installed and up to date. Here's an excerpt
> from M-x package-list-packages:
> markdown-mode 20220212.728 installed Major
> mode for
> Markdown-formatted text
> poly-R 20230416.1454 installed Various
> polymodes for R language
> poly-markdown 20230202.1210 installed Polymode for
> markdown-mode
> poly-noweb 20200316.1315 installed Polymode
> for noweb
> polymode 20230317.1218 installed Extensible
> framework for multiple major modes
>
> With the exception of poly-noweb, they're all 2023 packages.
>
> Yet, when I open an *.Rmd file, I get this in the Messages buffer:
>
> File mode specification error: (error Autoloading file
> /home/kevin/.emacs.d/polymode/modes/poly-R.el failed to define function
> poly-gfm+r-mode)
> Package cl is deprecated
>
> I then added your alternative define-polymode section, and the error
> about poly-gfm+r-mode went away, but I still have this message in the
> Messages buffer when I start Emacs with an *.Rmd file:
>
> File mode specification error: (cl-no-applicable-method clone nil)
> Package cl is deprecated
>
> I can't find a reference to a 'cl' package in my init.el. In addition,
> the *.Rmd file is in Fundamental mode, and not ESS or poly-R mode.
>
> When I try to manually invoke the poly mode, with 'M-x
> poly-gfm+r-mode',
> I get the message:
>
> cl-no-applicable-method: No applicable method: clone, nil
>
> Any ideas what's going on with my system? I'm so worried I'm just
> making
> a hash of things with these changes.
>
> Thanks for any advice or guidance.
>
> -Kevin
>
> On 4/22/23 06:00, ess-help-requ...@r-project.org
> <mailto:ess-help-requ...@r-project.org> wrote:
> > ------------------------------
> >
> > Message: 2
> > Date: Fri, 21 Apr 2023 11:09:43 -0400
> > From: "Tyler Smith"<ty...@plantarum.ca <mailto:ty...@plantarum.ca>>
> > To: ESS-help<ess-help@r-project.org <mailto:ess-help@r-project.org>>
> > Subject: Re: [ESS] Emacs, ESS and Rmarkdown: Is this the way compile
> > is supposed to work?
> > Message-ID:<a2b88f26-7760-41c2-8e9d-e4ea5de4b...@app.fastmail.com
> <mailto:a2b88f26-7760-41c2-8e9d-e4ea5de4b...@app.fastmail.com>>
> > Content-Type: text/plain; charset="us-ascii"
> >
> > Hi Kevin,
> >
> > If you have an older version of `poly-R`, the function
> `poly-gfm+r-mode` might not be present. This was added to `poly-R`
> dev in July 2021, I'm not sure exactly when it would have been added
> to the released version.
> >
> > If that's the case, updating to the current version of `poly-R`
> should fix the problem.
> >
> > Alternatively, you need the following code evaluated*after*
> `(require 'poly-R)` and*before* `(add-to-list ...)`:
> >
> > ```
> > (define-polymode poly-gfm+r-mode poly-markdown+r-mode
> > :lighter " PM-Rmd(gfm)"
> > :hostmode 'poly-gfm-hostmode)
> > ```
> >
> > But that really shouldn't be necessary.
> >
> > Best,
> >
> > Tyler
> > -- plantarum.ca <http://plantarum.ca>
>
>
> ______________________________________________
> ESS-help@r-project.org <mailto:ESS-help@r-project.org> mailing list
> https://stat.ethz.ch/mailman/listinfo/ess-help
> <https://stat.ethz.ch/mailman/listinfo/ess-help>
>
______________________________________________
ESS-help@r-project.org mailing list
https://stat.ethz.ch/mailman/listinfo/ess-help
