Dave and Mike - Jonathan posted a follow-up reply on this already. The latest 1.5.1 version uploaded to OFED during the weekend has solved this problem. The OFED daily build has already this fix. This latest MVAPICH2 version (1.5.1) is planned to be released tomorrow.
Mike - Please feel free to post your MVAPICH2 related questions to the MVAPICH mailing list. Thanks, DK On Fri, 10 Sep 2010, Dave Goodell wrote: > Hi Mike, > > Stock MPICH2 does not use hwloc directly inside the MPI library. It is only > used by the hydra process manager. MVAPICH2 appears to be using hwloc > directly inside the library, so you'll need to ask the OSU folks for a fix. > > They can be contacted at mvapich-disc...@cse.ohio-state.edu. > > http://mail.cse.ohio-state.edu/mailman/listinfo/mvapich-discuss > > -Dave > > On Sep 10, 2010, at 1:42 PM CDT, Mike Heinz wrote: > > > Hello all, > > > > I'm trying to build mvapich2-1.5.1 on an RHEL 5 update 3 system. It builds > > from the SRPM just fine, but when I try to compile test programs, they > > don't link. It appears that a set of routines, hwloc_* are missing from the > > shared library. > > > > [r...@homer bandwidth]# /usr/mpi/gcc/mvapich2-1.5.1/bin/mpicc bw.c > > /usr/mpi/gcc/mvapich2-1.5.1/lib/libmpich.so: undefined reference to > > `hwloc_get_obj_by_depth' > > /usr/mpi/gcc/mvapich2-1.5.1/lib/libmpich.so: undefined reference to > > `hwloc_topology_get_depth' > > /usr/mpi/gcc/mvapich2-1.5.1/lib/libmpich.so: undefined reference to > > `hwloc_set_cpubind' > > /usr/mpi/gcc/mvapich2-1.5.1/lib/libmpich.so: undefined reference to > > `hwloc_topology_init' > > /usr/mpi/gcc/mvapich2-1.5.1/lib/libmpich.so: undefined reference to > > `hwloc_cpuset_cpu' > > /usr/mpi/gcc/mvapich2-1.5.1/lib/libmpich.so: undefined reference to > > `hwloc_get_depth_type' > > /usr/mpi/gcc/mvapich2-1.5.1/lib/libmpich.so: undefined reference to > > `hwloc_get_type_depth' > > /usr/mpi/gcc/mvapich2-1.5.1/lib/libmpich.so: undefined reference to > > `hwloc_get_nbobjs_by_depth' > > /usr/mpi/gcc/mvapich2-1.5.1/lib/libmpich.so: undefined reference to > > `hwloc_compare_types' > > /usr/mpi/gcc/mvapich2-1.5.1/lib/libmpich.so: undefined reference to > > `hwloc_topology_destroy' > > /usr/mpi/gcc/mvapich2-1.5.1/lib/libmpich.so: undefined reference to > > `hwloc_topology_load' > > /usr/mpi/gcc/mvapich2-1.5.1/lib/libmpich.so: undefined reference to > > `hwloc_cpuset_alloc' > > collect2: ld returned 1 exit status > > > > compared with: > > > > [r...@homer bandwidth]# /usr/mpi/gcc/mvapich2-1.5.1/bin/mpicc bw.c > > /usr/mpi/gcc/mvapich2-1.5.1/lib/libmpich.a > > [r...@homer bandwidth]# > > > > [r...@homer lib]# nm libmpich.so | grep hwloc_compare_types > > U hwloc_compare_types > > > > [r...@homer lib]# nm libmpich.a | grep hwloc_compare_types > > 0000000000000020 T hwloc_compare_types > > > > I'm building the binary RPM as follows: > > > > [r...@homer SRPMS]# rpmbuild --rebuild > > --define '_topdir > > /home/mhein^Mnz/work/OFED_SOURCE/buildtemp/OFEDRPMS' > > --buildroot '/home/mheinz^Mz/work/OFED_SOURCE/buildtemp/build' > > --define 'build_root > > /home/mh^Mheinz/work/OFED_SOURCE/buildtemp/build' > > --target x86_64 --define ^M '_name mvapich2_gcc' > > --define 'compiler gcc' --define 'impl of^Mfa' > > --define 'open_ib_home /usr' --define '_usr /usr' > > --define 'comp_env CC=gcc CXX=g++ F77=gfortran F90=gfortran' > > --define 'auto_req 0' > > --define 'mpi_selector /usr/bin/mpi-sele^Mector' > > --define '_prefix /usr/mpi/gcc/mvapich2-1.5.1' > > --define 'shaared_libs 1' > > --define 'romio 1' > > --define 'rdma --with-rdma=gen2' > > --define 'ib_include --with-ib-include=/usr/include' > > --define 'ib_libpath --with-ib-libpath=/usr/lib64' > > --define 'configure_options --with-psm==no' > > mvapich2-*.src.rpm > > > > Can someone tell me what I'm doing wrong? > > > > _______________________________________________ > ewg mailing list > ewg@lists.openfabrics.org > http://lists.openfabrics.org/cgi-bin/mailman/listinfo/ewg > _______________________________________________ ewg mailing list ewg@lists.openfabrics.org http://lists.openfabrics.org/cgi-bin/mailman/listinfo/ewg
